PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22124_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 40623.4 Da PI: 6.3081 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 89 | 111 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H Cotton_A_22124_BGI-A2_v1.0 89 CSyeGCGKTFIDAGALRKHSHIH 111 77779**************7766 PP | |||||||
2 | zf-C2H2 | 17.4 | 1.3e-05 | 116 | 140 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H Cotton_A_22124_BGI-A2_v1.0 116 YVCHweGCGKKFLDSSKLKRHFLIH 140 9********************8877 PP | |||||||
3 | zf-C2H2 | 15 | 7.3e-05 | 146 | 172 | 1 | 23 |
EEET....TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp....dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi +H Cotton_A_22124_BGI-A2_v1.0 146 FICPhegcDCGKRYAHEYKLKNHIASH 172 78999999*****************96 PP | |||||||
4 | zf-C2H2 | 13.9 | 0.00016 | 211 | 236 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Cotton_A_22124_BGI-A2_v1.0 211 YACPyeGCEKAYIHEYKLKLHLRReH 236 89**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.7E-14 | 82 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 87 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 87 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-6 | 88 | 112 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.07E-10 | 111 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-14 | 114 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0011 | 116 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.921 | 116 | 145 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.7E-13 | 137 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.598 | 146 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.76 | 146 | 172 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.77E-5 | 206 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-9 | 206 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0089 | 211 | 236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 211 | 241 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 213 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEMQYAHGLF ERRPILKSKA PAVKWFKRWV PQDVVATGGK CMILKWADLT FLTQLFCLEN 60 TLKALNDKEK EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHW 120 EGCGKKFLDS SKLKRHFLIH TGERDFICPH EGCDCGKRYA HEYKLKNHIA SHHEKNTTPE 180 VAKYAPPLEK IVKTTKPTGG AYGSASSDRP YACPYEGCEK AYIHEYKLKL HLRREHPGHM 240 SDENAENATA NADNEMDEAS DQDAYAGKRV NGKSQKQQSR AKPNVKMPPA KVARQKGSSP 300 SPATLPIPKK QWPIKEQVFE EEDSEETEED RDNVDDGWRY RENNEDDDEE TEYED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 2e-25 | 89 | 232 | 8 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016711659.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_016711660.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_016711661.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_016711662.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017627392.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017627393.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017627394.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017634478.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017634479.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017634480.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017643203.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017643204.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017643205.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017646750.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017646751.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Refseq | XP_017646752.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Swissprot | Q2V3L3 | 1e-130 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A1U8LAN2 | 0.0 | A0A1U8LAN2_GOSHI; uncharacterized zinc finger protein At4g06634-like | ||||
STRING | Gorai.002G214700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5859 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-117 | C2H2 family protein |
Publications ? help Back to Top | |||
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