PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22097_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 456aa MW: 51181.9 Da PI: 6.66

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22097_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	135	194	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +k l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grr++k+ss Cotton_A_22097_BGI-A2_v1.0 135 NKVLPCPRCNSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKNSS 194 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	131	191	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MTEPNDLTIK LFGKTIPLPE KSPKAVVAAT ISNIYATCDD DCNHNNNYKK DIVADKTIDA 60 EHELVDRKED QSKQDGTAPL VASEEFMNLE VTYGPSDKRD ALSIENESTG LETSKTDEDR 120 NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN 180 VPVGAGRRRS KNSSSHYRHV IVSEPLRNAY ETMCNTTQNR FHRPEELNIH VSYRRAKNGV 240 EHLNGSSIAT SNDEVYKAGS QDQMMQNCRS FPPHMPCFPG FFLPYSWNSA PWSSPLPPPT 300 FCPPSFSMPF YPTAPYWGCA LPTSWNVPWL PQPSSEMQTV PSSGSNSLSL GKHSRDEDMG 360 KPCSIGKDEP VNENNAERCL WISKTLRIGD PGEASRNSIW VTSGSKNDKS DSIGDERLFK 420 GFQSKGDERN QVLETSPILQ ANPAAFSRSI NFQESS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MTEPNDLTIK LFGKTIPLPE KSPKAVVAAT ISNIYATCDD DCNHNNNYKK DIVADKTIDA  60
EHELVDRKED QSKQDGTAPL VASEEFMNLE VTYGPSDKRD ALSIENESTG LETSKTDEDR  120
NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN  180
VPVGAGRRRS KNSSSHYRHV IVSEPLRNAY ETMCNTTQNR FHRPEELNIH VSYRRAKNGV  240
EHLNGSSIAT SNDEVYKAGS QDQMMQNCRS FPPHMPCFPG FFLPYSWNSA PWSSPLPPPT  300
FCPPSFSMPF YPTAPYWGCA LPTSWNVPWL PQPSSEMQTV PSSGSNSLSL GKHSRDEDMG  360
KPCSIGKDEP VNENNAERCL WISKTLRIGD PGEASRNSIW VTSGSKNDKS DSIGDERLFK  420
GFQSKGDERN QVLETSPILQ ANPAAFSRSI NFQESS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567176	3e-93	AJ567176.1 Gossypium hirsutum microsatellite DNA mGhCIR230, clone CIR230.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483587.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A2P5QQY7	0.0	A0A2P5QQY7_GOSBA; Uncharacterized protein
STRING	Gorai.006G015500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24746	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-78	cycling DOF factor 2