PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22086_BGI-A2_v1.0
Common NameF383_16463
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 232aa    MW: 26472.3 Da    PI: 7.7712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22086_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.6e-262474253
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEE CS
                        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYe 53
                                +DgynWrKYGqK++kg e++rsYY+Ct+ +Cpvkkkvers+ d+ ++ei Y+
  Cotton_A_22086_BGI-A2_v1.0 24 EDGYNWRKYGQKPIKGCEYSRSYYKCTHLKCPVKKKVERST-DGLITEILYK 74
                                8****************************************.*********7 PP
2WRKY102.72.1e-32152209159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ve s  dp++v++tYeg+Hnh+
  Cotton_A_22086_BGI-A2_v1.0 152 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNEGCNVRKHVESSM-DPRAVITTYEGKHNHD 209
                                 59***************************************9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.8771864IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-231974IPR003657WRKY domain
SuperFamilySSF1182902.62E-202173IPR003657WRKY domain
SMARTSM007748.4E-262385IPR003657WRKY domain
PfamPF031068.4E-202474IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-35137211IPR003657WRKY domain
SuperFamilySSF1182905.49E-28144211IPR003657WRKY domain
PROSITE profilePS5081134.83147211IPR003657WRKY domain
SMARTSM007741.4E-37152210IPR003657WRKY domain
PfamPF031068.1E-26153209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEYAEASQFD SKNQPSVAVD KPAEDGYNWR KYGQKPIKGC EYSRSYYKCT HLKCPVKKKV  60
ERSTDGLITE ILYKVCSIPG KNHESTEAAE LPGSSENEEQ NCDEEGRDER DNNDEPNPKR  120
SNAATEAAIT FSHKTVTEPK IVVQTRSEVE LLDDGYRWRK YGQKVVKGNP HPRSYYKCTN  180
EGCNVRKHVE SSMDPRAVIT TYEGKHNHDV PTSRNSVHTQ LTTICRSQNH TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36143211877Probable WRKY transcription factor 4
2lex_A1e-36143211877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697650.0KF669765.1 Gossypium hirsutum WRKY transcription factor 108 (WRKY108) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441426.11e-158PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ703e-79WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0B0NG991e-158A0A0B0NG99_GOSAR; Putative WRKY transcription factor 4-like protein
STRINGGorai.001G241200.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-76WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]