PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22025_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 335aa    MW: 38904.9 Da    PI: 6.3884
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22025_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34381302103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl k++++++d++++ ++sws+ g+sfvv+d++++++++Lp++Fkh+nf+SFvRQLn+YgF+k+++e+         weF+++
  Cotton_A_22025_BGI-A2_v1.0  38 FLYKTFNMVDDPSTNCVVSWSRGGSSFVVWDTHSLSSNLLPRFFKHNNFSSFVRQLNTYGFRKIDSEK---------WEFENE 111
                                 9****************************************************************998.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  F kg+k+ll++ikr+k++
  Cotton_A_22025_BGI-A2_v1.0 112 GFIKGQKHLLNSIKRRKNT 130
                                 ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3233127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5534127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-3634127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNQYFPLKEE FHCSNYSQYE DETPQPMEGL NDSGPPPFLY KTFNMVDDPS TNCVVSWSRG  60
GSSFVVWDTH SLSSNLLPRF FKHNNFSSFV RQLNTYGFRK IDSEKWEFEN EGFIKGQKHL  120
LNSIKRRKNT SQTPVVIQQS LGFCVEDGEV DRLRRDRRVL MMELVKLRQQ QHNTRAYIKA  180
MERRLQGTEK KQQQMMCFLA SAMQNPAFLN QLIQQKEKRM ELEEAMCKKR RRLRPVSVVR  240
VGESSRSSGG GSNPVKTEVL EFGDYGYEVK VMEALALEMQ EGAGDKDENR ERQGKELDQG  300
FWEELLNERF EGGEDEDMNV NVLVDQLGYL GSTPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-232912717129Heat shock factor protein 1
5d5v_B8e-232912717129Heat shock factor protein 1
5d5v_D8e-232912717129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRDR
2228232KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612171.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ338B01e-104HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A1U8NS091e-160A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRINGEOX946441e-159(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-83heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]