PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_21785_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 606aa MW: 67398.4 Da PI: 4.694

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21785_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	281.4	2.7e-86	233	604	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl 83 lLl++Ae v ++ e a++lL++ ++s++g+p+qR++ yf eAL++++ r ++ + +k+l+ ++ +++++ ++ ++ Cotton_A_21785_BGI-A2_v1.0 233 AALLLAAAEKVGYQQYESASRLLKQCDYMSSKTGNPVQRVVYYFSEALREKIEReTGRSSSKSLKWKPLCNYDTEMTALNPTV 315 579*************************************************77778888888888876663333333333 PP GRAS 84 ..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetg 162 + ++P+ ++s+++ qaI+e v+++++vHiiD+ i++G+QW L+qaLasR+ l+iT+v+ + k+ + tg Cotton_A_21785_BGI-A2_v1.0 316 laCHGAFPFGQVSQFAGIQAIVENVAEANKVHIIDLAIKNGIQWTILIQALASRQheYRLELLKITAVAT---EAKDLIDGTG 395 45899**********************************************5555679****...469999 PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 +rL++fA++lgvpf f+v++++++ dl+ + ++++ +E+++ +++ ++l ++ +e+ ++k+++ ++P ++vv+e e Cotton_A_21785_BGI-A2_v1.0 396 KRLSSFAQSLGVPFAFKVVMVSDMLDLKEDFFELDAEETIVAYAAFAFRSMLVSPNRIEN----IMKVLRVMNPCLMVVTEVE 474 ************************************************77777777....*************** PP GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 a+hns+ F++rf+e l y+sa fd++++ + ++s++r +E +++g i+n+va+eg++r+ r+ ++ Wr+ + + G+++++ Cotton_A_21785_BGI-A2_v1.0 475 ANHNSPIFVNRFIEVLFYFSAYFDCIATCMEQDSKNREILESVFFGDGIRNMVAAEGTDRKVRNVKFDVWRAFFVRYGMEEAE 557 ******************************************************************************* PP GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ls + qa+l+l++++ + +++ + ++l+ gWk+ p++s+S+W+ Cotton_A_21785_BGI-A2_v1.0 558 LSMSSKYQADLILKTFAcGTCCTLDMNGKCLLVGWKGTPMLSISVWK 604 *************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.956	206	583	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-84	233	604	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MGNDVFSFGD LNVYGAPDKL SSSNNEFESF DGGNKGKAGG FYGVEDWGET GGIDSLPSDY 60 GFYGDASMGA SGFSFFKQDH HHQLQQQQQQ EQLSFIEYGL LNGVSFNAQS PLIQACFDEI 120 AELGGINNGV YEDIGEAKKG KQYPGLSSLG LLNNYGNGFK RLNGERKSDD DITVSDTKDE 180 DRKLSTEEVM RVAGEMFLKS CGQTIDGISG IDHPFGLSFS GFSDRETRDI ELAALLLAAA 240 EKVGYQQYES ASRLLKQCDY MSSKTGNPVQ RVVYYFSEAL REKIERETGR SSSKSLKWKP 300 LCNYDTEMTA LNPTVLACHG AFPFGQVSQF AGIQAIVENV AEANKVHIID LAIKNGIQWT 360 ILIQALASRQ HEYRLELLKI TAVATEAKDL IDGTGKRLSS FAQSLGVPFA FKVVMVSDML 420 DLKEDFFELD AEETIVAYAA FAFRSMLVSP NRIENIMKVL RVMNPCLMVV TEVEANHNSP 480 IFVNRFIEVL FYFSAYFDCI ATCMEQDSKN REILESVFFG DGIRNMVAAE GTDRKVRNVK 540 FDVWRAFFVR YGMEEAELSM SSKYQADLIL KTFACGTCCT LDMNGKCLLV GWKGTPMLSI 600 SVWKFL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MGNDVFSFGD LNVYGAPDKL SSSNNEFESF DGGNKGKAGG FYGVEDWGET GGIDSLPSDY  60
GFYGDASMGA SGFSFFKQDH HHQLQQQQQQ EQLSFIEYGL LNGVSFNAQS PLIQACFDEI  120
AELGGINNGV YEDIGEAKKG KQYPGLSSLG LLNNYGNGFK RLNGERKSDD DITVSDTKDE  180
DRKLSTEEVM RVAGEMFLKS CGQTIDGISG IDHPFGLSFS GFSDRETRDI ELAALLLAAA  240
EKVGYQQYES ASRLLKQCDY MSSKTGNPVQ RVVYYFSEAL REKIERETGR SSSKSLKWKP  300
LCNYDTEMTA LNPTVLACHG AFPFGQVSQF AGIQAIVENV AEANKVHIID LAIKNGIQWT  360
ILIQALASRQ HEYRLELLKI TAVATEAKDL IDGTGKRLSS FAQSLGVPFA FKVVMVSDML  420
DLKEDFFELD AEETIVAYAA FAFRSMLVSP NRIENIMKVL RVMNPCLMVV TEVEANHNSP  480
IFVNRFIEVL FYFSAYFDCI ATCMEQDSKN REILESVFFG DGIRNMVAAE GTDRKVRNVK  540
FDVWRAFFVR YGMEEAELSM SSKYQADLIL KTFACGTCCT LDMNGKCLLV GWKGTPMLSI  600
SVWKFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-38	240	603	27	378	Protein SCARECROW
5b3h_A	1e-38	240	603	26	377	Protein SCARECROW
5b3h_D	1e-38	240	603	26	377	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614609	8e-39	JX614609.1 Gossypium hirsutum clone NBRI_GE58134 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632663.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1U8JJM6	0.0	A0A1U8JJM6_GOSHI; DELLA protein RGL1-like
STRING	Gorai.005G066300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15786	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-56	RGA-like 2