PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21679_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 584aa    MW: 65023.4 Da    PI: 6.1332
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21679_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256.1e-1302115801373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA+++s++++ + ++l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++
  Cotton_A_21679_BGI-A2_v1.0 211 LKQLLIACAKVLSENNMDEFDKLIAKARGAVSISGEPIQRLGAYMVEGLVARKEASGSSIYRALHCREPE---GKDLLSYMQV 290
                                 689******************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P+lkf++++aN aI ea  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++++r
  Cotton_A_21679_BGI-A2_v1.0 291 LYEICPYLKFGYMAANGAIAEACRTEDRIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLSKyaRGGGLEAVKRR 373
                                 ******************************************************************999989999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+ + e++ +p+ef+  +     d++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe++
  Cotton_A_21679_BGI-A2_v1.0 374 LEALSEKFSIPVEFQG-MPVFAPDITRDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESN 455
                                 ****************.6888999*********************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++Fl rf+e+leyy a+f+s++++lpr+ +er++vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls
  Cotton_A_21679_BGI-A2_v1.0 456 TNTAPFLPRFIETLEYYLAMFESIDETLPRDRKERVNVEEHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLS 538
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +++++ ++ llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Cotton_A_21679_BGI-A2_v1.0 539 SYVNSVIRGLLRCYS-KHYTLVEKDGAMLLGWKDRNLISASAW 580
                                 ***********9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.467185562IPR005202Transcription factor GRAS
PfamPF035142.1E-127211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSHQLFGYG VTGAGLSYST FPSIPNRLFS SLKSDIGNSP NSPFFTPFDC DTNTTLSDSQ  60
EQHSSTENLS GLSPSCNSSL ESNTYFHRLS PSLDCRSESL LFSSGGTSYT QDANSGHKVI  120
YTLQELETAL MAPDENEDLT TPSVSYGESS RPQTAGQRSR AWSQECQGSL ALLPQTSFVS  180
KHRQSTEVSH VEKRQKSIED FSWRGIPPGN LKQLLIACAK VLSENNMDEF DKLIAKARGA  240
VSISGEPIQR LGAYMVEGLV ARKEASGSSI YRALHCREPE GKDLLSYMQV LYEICPYLKF  300
GYMAANGAIA EACRTEDRIH IIDFQIGQGT QWMTLLQALA ARPGGAPHVR ITGIDDPLSK  360
YARGGGLEAV KRRLEALSEK FSIPVEFQGM PVFAPDITRD MLDVRPGEAL AVNFPLQLHH  420
TPDESVDVNN PRDGLLRMVK SLSPKVTTLV EQESNTNTAP FLPRFIETLE YYLAMFESID  480
ETLPRDRKER VNVEEHCLAR DIVNIIACEG KERVERHELF GKWKSRLTMA GFRQYPLSSY  540
VNSVIRGLLR CYSKHYTLVE KDGAMLLGWK DRNLISASAW HCDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6221858026378Protein SCARECROW
5b3h_A5e-6221858025377Protein SCARECROW
5b3h_D5e-6221858025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639076.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8KK400.0A0A1U8KK40_GOSHI; scarecrow-like protein 21
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]