PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21628_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 191aa MW: 21486.3 Da PI: 4.762 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 45.6 | 1.9e-14 | 66 | 98 | 44 | 76 |
TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 44 qqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 q fh ls+fDe+krsCrr+L++hn+rrr+k Cotton_A_21628_BGI-A2_v1.0 66 QNERMFHLLSDFDEGKRSCRRKLERHNNRRRRK 98 55567*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.007 | 15 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-11 | 66 | 101 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-4 | 66 | 85 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-8 | 66 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVVSGLGDGG YENEMMEGPS ENVTVRVRMM MLVRELRMMN KKDDRGLWGD CMMLSGVIRW 60 MCCWWQNERM FHLLSDFDEG KRSCRRKLER HNNRRRRKPV GSKTEVNKES LGAVQSEDIA 120 CDGEAGKDDL SLSGQTAEEP PFESEDGLVS ADCSAPMLQT VNNDSTVALI DTGTDGGKED 180 LKCSITTIFY K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 96 | RRKLERHNNRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482070.1 | 5e-71 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X2 | ||||
Refseq | XP_017649675.1 | 1e-70 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
Refseq | XP_017649676.1 | 6e-71 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X2 | ||||
TrEMBL | A0A0D2N8B1 | 1e-72 | A0A0D2N8B1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G056500.1 | 4e-70 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 5e-10 | squamosa promoter binding protein-like 7 |