PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21593_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 229aa MW: 25733.2 Da PI: 7.715

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21593_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	56	108	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+llP ++K ++ Av YIk+Lq Cotton_A_21593_BGI-A2_v1.0 56 KKSMHRDIERQRRQEMSTLYASLRTLLPLeY---IKGKRAISDHMNGAVSYIKDLQ 108 6899***********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.19E-10	53	111	No hit	No description
SuperFamily	SSF47459	2.09E-13	54	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.459	55	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-10	56	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	56	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0029	61	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDEMFFHFSS GSDPQNTIPQ DEILDYVPMG GSSSRGRQRK LLSTEKRENS NADDKKKSMH 60 RDIERQRRQE MSTLYASLRT LLPLEYIKGK RAISDHMNGA VSYIKDLQKR IDGLNAKRDE 120 LKKASDNWSG FEQGMTSNEA FPSSAVVRQS LDGIEVVIST SVGLKALTIS RVLQLLLEEG 180 LDVVNCITTR IDGGLIHTIK SEVSNLRGVH VPYLEQKINE VISSLSQTY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619010.1	1e-169	PREDICTED: transcription factor bHLH120-like
TrEMBL	A0A0D2S5Z0	1e-161	A0A0D2S5Z0_GOSRA; Uncharacterized protein
STRING	Gorai.006G196500.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-47	bHLH family protein