PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21420_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 624aa MW: 71122.9 Da PI: 7.0201

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21420_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.8	4.7e-111	251	620	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lL++cA+ v+ +d++ a+++L+ +++++s++gd +qRla+yf++AL +rla+++ ly+ l +++ts +++l+a+ +++ Cotton_A_21420_BGI-A2_v1.0 251 SLLTQCAQSVAVNDQRTANEMLKLIRQHSSESGDGTQRLAHYFANALTTRLAGMGAPLYAHLLSNRTS---AADVLKAYGVYV 330 79*******************************************************999888887...89****** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++P+ k+s++ aN+ I+e +e+++++HiiDf+i +G+QWp+L+q L+++++gp +lRiTg++ p++g +e++eetg+rL+ Cotton_A_21420_BGI-A2_v1.0 331 LACPFKKMSNFYANKRIMELAEKATTLHIIDFGICYGFQWPCLIQLLSAQAGGPSKLRITGIEFPQPGfrPAERVEETGRRLK 413 ***************************************************************9*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 +++e+++v fe nv +ak++e+++leeL++ ++E+++Vn++++l++l+d++v+ +s+r++vLkl++s++P+++++ + +n Cotton_A_21420_BGI-A2_v1.0 414 RYCERFNVLFECNV-IAKKWEAIQLEELKITKDEVVVVNCMYRLKNLPDDTVAPTSARETVLKLIRSINPELFIHGVTNGTYN 495 *********9.7*************************************************************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 ++ F+ rf eal ++sa fd +ea+++r++ +r++ E+e+ gr+i+n++aceg+er+er et+++W+ r + GFk vpl+++ Cotton_A_21420_BGI-A2_v1.0 496 APFFVSRFREALFHFSAQFDIFEATVARDDPQRMMFEKEIHGRDIMNLIACEGTERVERPETYKQWHVRTLRTGFKRVPLNQE 578 ******************************************************************************* PP GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k++ +++ + + + v+ + +++++gWk+r ++++S+W+ Cotton_A_21420_BGI-A2_v1.0 579 LVKKVMDMIQSSYHRDFVVDVDGHWMLQGWKGRIIYALSCWK 620 *********999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.342	223	600	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-108	251	620	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MDTLFQDLPG SMYGFKFDHG SVPMPVYANH NLDNGSKESP IDSSSSSPSS GMSSDSPFPN 60 EMLKYINQML MEEDLEEKTC MLQDCLALQA AERSFYQVLC HNYPIPAGLN HYYPDDDCNS 120 SKGEFNSFCP QTSLIDSLER TSLFPDLRRG TVERLGEGSK SPSVDVDKVR GRKNYQREDV 180 EEGRIIKQSA LSLEDSEQTE MFDDVLLCKG ENEDSPKCSL NGNSAQHRQI KRSNGRRKKN 240 EKKSEAVDLW SLLTQCAQSV AVNDQRTANE MLKLIRQHSS ESGDGTQRLA HYFANALTTR 300 LAGMGAPLYA HLLSNRTSAA DVLKAYGVYV LACPFKKMSN FYANKRIMEL AEKATTLHII 360 DFGICYGFQW PCLIQLLSAQ AGGPSKLRIT GIEFPQPGFR PAERVEETGR RLKRYCERFN 420 VLFECNVIAK KWEAIQLEEL KITKDEVVVV NCMYRLKNLP DDTVAPTSAR ETVLKLIRSI 480 NPELFIHGVT NGTYNAPFFV SRFREALFHF SAQFDIFEAT VARDDPQRMM FEKEIHGRDI 540 MNLIACEGTE RVERPETYKQ WHVRTLRTGF KRVPLNQELV KKVMDMIQSS YHRDFVVDVD 600 GHWMLQGWKG RIIYALSCWK PVKN

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MDTLFQDLPG SMYGFKFDHG SVPMPVYANH NLDNGSKESP IDSSSSSPSS GMSSDSPFPN  60
EMLKYINQML MEEDLEEKTC MLQDCLALQA AERSFYQVLC HNYPIPAGLN HYYPDDDCNS  120
SKGEFNSFCP QTSLIDSLER TSLFPDLRRG TVERLGEGSK SPSVDVDKVR GRKNYQREDV  180
EEGRIIKQSA LSLEDSEQTE MFDDVLLCKG ENEDSPKCSL NGNSAQHRQI KRSNGRRKKN  240
EKKSEAVDLW SLLTQCAQSV AVNDQRTANE MLKLIRQHSS ESGDGTQRLA HYFANALTTR  300
LAGMGAPLYA HLLSNRTSAA DVLKAYGVYV LACPFKKMSN FYANKRIMEL AEKATTLHII  360
DFGICYGFQW PCLIQLLSAQ AGGPSKLRIT GIEFPQPGFR PAERVEETGR RLKRYCERFN  420
VLFECNVIAK KWEAIQLEEL KITKDEVVVV NCMYRLKNLP DDTVAPTSAR ETVLKLIRSI  480
NPELFIHGVT NGTYNAPFFV SRFREALFHF SAQFDIFEAT VARDDPQRMM FEKEIHGRDI  540
MNLIACEGTE RVERPETYKQ WHVRTLRTGF KRVPLNQELV KKVMDMIQSS YHRDFVVDVD  600
GHWMLQGWKG RIIYALSCWK PVKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-49	253	620	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624430.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1U8P0T9	0.0	A0A1U8P0T9_GOSHI; scarecrow-like protein 30
STRING	Gorai.004G005200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	0.0	GRAS family protein