PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21360_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 577aa    MW: 64052.4 Da    PI: 6.2034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21360_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.7e-1292045731373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA+ +s+++  + + l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++
  Cotton_A_21360_BGI-A2_v1.0 204 LKQLLIACAKTLSENNIDKFNMLIAKARVAVSIYGEPIQRLGAYMVEGLVARKEASGSNIYRALRCQEPE---GKDLLTYMHT 283
                                 689******************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P+lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  +   le++++r
  Cotton_A_21360_BGI-A2_v1.0 284 LYEICPYLKFGYMAANGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPYVRITGIDDPVSKyaRGGGLEAVERR 366
                                 *******************************************************************99999999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L  + e++gvp+ef+  +    +d++ ++L+vkpgEalaVn+ lqlh+++desv+++++rd +L++v+slsPkv+++veqe++
  Cotton_A_21360_BGI-A2_v1.0 367 LMALSEQFGVPVEFHG-MPVFAADITRDMLDVKPGEALAVNFPLQLHHTPDESVDVNNPRDGILRMVRSLSPKVITLVEQESN 448
                                 ****************.6888999*********************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++Fl rf+e+leyy a+f+s+++++pr+ +eri+vE+++l+r++vnv+aceg+er+erhe ++kW++rl++aGF+p+pls
  Cotton_A_21360_BGI-A2_v1.0 449 TNTAPFLSRFIETLEYYLAMFESIDETMPRHRRERINVEQHCLARDVVNVIACEGKERVERHELFGKWKSRLTMAGFRPYPLS 531
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +++++ ++ ll+ ++ + y++ e++g+++lgWkdr+L+s+SaW
  Cotton_A_21360_BGI-A2_v1.0 532 SYVNSVIRGLLKCYS-KHYTLVEKDGAMLLGWKDRNLISASAW 573
                                 ***********9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.856178555IPR005202Transcription factor GRAS
PfamPF035142.0E-126204573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDSRLCRYGV ISAGLSYSTS YSDVPSVPNS LFSSLKSNIG NSPISSFSIQ PDCDTNIALS  60
DSQEQYNSTE NLSGYASCNS SLESSTYFHQ SSPSVDCRRE SLLIHSDGTS YIEDANSSHE  120
ILYTSQELGT AVMAPDGANE VTNTPQTNGQ RYRASSKDCR GSSMCQPQTT FVSNRRQSTE  180
AAHVEKRLTA IEDLSLQSIP PGNLKQLLIA CAKTLSENNI DKFNMLIAKA RVAVSIYGEP  240
IQRLGAYMVE GLVARKEASG SNIYRALRCQ EPEGKDLLTY MHTLYEICPY LKFGYMAANG  300
AIAEACRTED RIHIIDFQIA QGTQWVTLLQ ALAARPGGAP YVRITGIDDP VSKYARGGGL  360
EAVERRLMAL SEQFGVPVEF HGMPVFAADI TRDMLDVKPG EALAVNFPLQ LHHTPDESVD  420
VNNPRDGILR MVRSLSPKVI TLVEQESNTN TAPFLSRFIE TLEYYLAMFE SIDETMPRHR  480
RERINVEQHC LARDVVNVIA CEGKERVERH ELFGKWKSRL TMAGFRPYPL SSYVNSVIRG  540
LLKCYSKHYT LVEKDGAMLL GWKDRNLISA SAWCCDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-6222757326374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603587.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_017603588.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_017603589.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8MNS40.0A0A1U8MNS4_GOSHI; scarecrow-like protein 21
STRINGGorai.009G427800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-177scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]