PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21321_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 417aa    MW: 47090.1 Da    PI: 6.4642
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21321_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.15.3e-20171223154
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                                 kprl W++eLH++F+ a++ L G  +A Pk+il +m+ + Lt  +v+SHLQk++
  Cotton_A_21321_BGI-A2_v1.0 171 KPRLLWNEELHQKFIAAITAL-GYANARPKSILTMMDEPNLTQRQVASHLQKHK 223
                                 79*******************.99****************************87 PP
2Response_reg45.15.4e-16151201107
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vd + + ++ll+++l+   y +v++++  + al l++e +  + l++ D++m +++ l +l+++ + +  +p i+++ ++
  Cotton_A_21321_BGI-A2_v1.0  15 VLVVDHDTTSLMLLASMLQLFSY-QVTTTEVESVALSLIEEAKdrFKLVMADVNMDDVNSLSFLRKLLKMN--IPFILMSNEK 94 
                                 89*********************.***************888778**********************9865..********** PP

                                 THHHHHHHHHTTESEEEESS--HHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeel 107
                                   + a++a+ +Ga+ +l+Kp+++ +l
  Cotton_A_21321_BGI-A2_v1.0  95 GHKAAEKAVTYGASLHLEKPISKHDL 120
                                 *********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.55E-2111170IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-2112147No hitNo description
SMARTSM004481.9E-813124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.82614128IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-1315121IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.30E-1416121No hitNo description
PROSITE profilePS512949.31168227IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-21169228IPR009057Homeodomain-like
SuperFamilySSF466891.02E-14169228IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17171224IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEEKRRSNCG EGFSVLVVDH DTTSLMLLAS MLQLFSYQVT TTEVESVALS LIEEAKDRFK  60
LVMADVNMDD VNSLSFLRKL LKMNIPFILM SNEKGHKAAE KAVTYGASLH LEKPISKHDL  120
KYLWQYAYGR PAKRAKHLHD NELRTYDPNK NVGERDEQKK MLNIMPPTER KPRLLWNEEL  180
HQKFIAAITA LGYANARPKS ILTMMDEPNL TQRQVASHLQ KHKEHMKRLM SKASPSELAS  240
NANASTSIYG KPGFLYMPQG YYSVLSQLGG HTHKYLNDSV AGTSQFSYLA QHSTAGRFSS  300
DYHNEETLQF PNILESMHEK QNIIPDPSPS GNLVYENHNW EPWTEAARRM AEAEIGVGNA  360
AGGVTWNQQS PELAQLLKHL EEEGDACGDC ANQPNPDAVD QFCEWLKEAI QGNDNNP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5818801e-135JX581880.1 Gossypium hirsutum clone NBRI_GE14608 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635925.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A1U8KTZ00.0A0A1U8KTZ0_GOSHI; two-component response regulator ARR14-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2005156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-40response regulator 14