PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21121_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 643aa MW: 71075 Da PI: 7.528 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 256 | 276 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G Ck Gd+C +aHg Cotton_A_21121_BGI-A2_v1.0 256 PCPEFRK-GSCKQGDNCEYAHG 276 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 3.7E-16 | 30 | 176 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.1E-14 | 36 | 158 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.592 | 60 | 169 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0067 | 60 | 90 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.31E-13 | 62 | 158 | No hit | No description |
Pfam | PF12796 | 6.0E-7 | 65 | 160 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0019 | 95 | 127 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.621 | 95 | 130 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 248 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 251 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.319 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 256 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 283 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9 | 286 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.409 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MKGVSHKVDK VPLKFSFLLE LSASNDLIGF RNAIEREGRD IDERSLWYGR RMGSRKMGIE 60 QRTPLLIASL FGSKDVVKYI LKSGRVDVNR ACGSDGATAL HCVVAGGSLN SSEVIKTLLD 120 ASANINALDA NGNRPRDLIA MACNSAFNSR KKILESLLKG SGSDDEIERL PVHLEACDSM 180 PWVLKDETEK KEYPIDVTLP DIKNEMYGTD EFRMYNFKVT PCSRAYSHDW TGCPFVHPGE 240 NARRRDPRKH QYSCVPCPEF RKGSCKQGDN CEYAHGIFES WLHPAQYRTR LCKDESNCNR 300 KVCFFAHKPE ELRPVYVSTG SAVPSPRSYS ATGSVLDMGS MSTHALGSPS VMIPPTSTPP 360 LTPTGTSSST TETTWPNQSN IIPTLQLHGS KLKAARCARN LELNIEQLGR ESHLRRQKQQ 420 LMDEIPGLSS PTNWNNPLST TSAFSASADQ TSELNRFKGM KPLDLTSLPQ LQGISLDAST 480 HQLQSPTGVQ MPQNTNEQLH ASYPTSLAAP PVRASQSFRV EPSKPTATTV LSPRPIAFAN 540 WSQGFMEHTT VNHHLGFSSP GSFASAMPSK FSNWILLDGK LDWDVQGDEL NKLKKPSLAF 600 QNSDTNFGNP SQSMSPTSNE PDVSWVQSLL KDTSSEQLNF EDE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016668851.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1U8HS95 | 0.0 | A0A1U8HS95_GOSHI; zinc finger CCCH domain-containing protein 66-like | ||||
STRING | Gorai.006G106200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |