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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20826_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23935.4 Da PI: 9.8261 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr g++KKA+ELSvLCdae+a+i+fs+tgkl++yss Cotton_A_20826_BGI-A2_v1.0 9 KKIDNVAARQVTFSKRRRGLFKKAHELSVLCDAEIALIVFSTTGKLFDYSS 59 689**********************************************96 PP | |||||||
2 | K-box | 48.3 | 4.3e-17 | 98 | 173 | 24 | 99 |
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 L+ke+ + +++R+l+Ge+L+ L ++ L++Le+ +e +l+++ ++K+e ++++i++l++k el een++L++++e Cotton_A_20826_BGI-A2_v1.0 98 LRKEMAEKTHQLRQLKGEELQGLGYEGLNHLEKLVEGGLRRVTETKDERFFKEISTLKMKGAELVEENQQLKQQME 173 566666666889*************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.829 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-30 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.26E-40 | 3 | 74 | No hit | No description |
PRINTS | PR00404 | 2.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.028 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.0E-14 | 95 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTRKRIQIKK IDNVAARQVT FSKRRRGLFK KAHELSVLCD AEIALIVFST TGKLFDYSSA 60 SMEKVIERRN QQSGKGIDRA VTSPYHGLQV GSRTCVMLRK EMAEKTHQLR QLKGEELQGL 120 GYEGLNHLEK LVEGGLRRVT ETKDERFFKE ISTLKMKGAE LVEENQQLKQ QMENLPHMVH 180 VQPSESIAHA GSSENPIQPY DNSQDISLTL G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-22 | 1 | 66 | 1 | 66 | MEF2C |
5f28_B | 9e-22 | 1 | 66 | 1 | 66 | MEF2C |
5f28_C | 9e-22 | 1 | 66 | 1 | 66 | MEF2C |
5f28_D | 9e-22 | 1 | 66 | 1 | 66 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155634 | 0.0 | KC155634.1 Gossypium hirsutum MADS box protein MADS39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633142.1 | 1e-156 | PREDICTED: MADS-box protein SVP-like isoform X2 | ||||
Swissprot | Q9FVC1 | 7e-61 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1U8HKP1 | 1e-153 | A0A1U8HKP1_GOSHI; MADS-box protein SVP-like isoform X2 | ||||
TrEMBL | A0A1U8HTE8 | 1e-153 | A0A1U8HTE8_GOSHI; MADS-box protein AGL24-like isoform X1 | ||||
STRING | Gorai.005G225500.1 | 1e-138 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28332 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-51 | MIKC_MADS family protein |