PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20787_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 187aa    MW: 21470.7 Da    PI: 5.8093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20787_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-054785655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 ++ErrRR+++ +++ +Lr+l+            Ka+i   A+ YI++Lq
  Cotton_A_20787_BGI-A2_v1.0 47 LQAERRRRQKLSDRLLTLRSLMN-----------KATIIDDAITYIQELQ 85
                                579*****************975...........559**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-123899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-83989No hitNo description
Gene3DG3DSA:4.10.280.101.9E-841102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-64790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDMEFLKSEL NELAITDHQR LTGGRMGRRK LEDDDDNNNK EFKSKNLQAE RRRRQKLSDR  60
LLTLRSLMNK ATIIDDAITY IQELQKTSQV LSEQLLEMEG SSEESVMPMK LEIDVAQHDM  120
KKCGIKEEVK VSNIDGNKFL IKIIVEKKRG CFTQLVEAMN YLGFELSETN VTTFSGAMLF  180
SSCVHVS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605994.11e-131PREDICTED: transcription factor DYT1
TrEMBLA0A2P5XEQ01e-132A0A2P5XEQ0_GOSBA; Uncharacterized protein
STRINGGorai.011G019900.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-37bHLH family protein