 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_20528_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
LBD |
| Protein Properties |
Length: 211aa MW: 22963.2 Da PI: 4.9369 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_20528_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 135.6 | 1.9e-42 | 43 | 142 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83
+CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe +r+da+ss+vyeA ar+rdPvyG++g +++l
Cotton_A_20528_BGI-A2_v1.0 43 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPECQRSDAVSSMVYEAGARIRDPVYGCAGAVFQL 125
7********************************************************************************** PP
DUF260 84 qqqleqlkaelallkee 100
q+q+++l+a+la+++++
Cotton_A_20528_BGI-A2_v1.0 126 QKQVNELQAQLAKAQAQ 142
*************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MEYSEPIPTP TISSSPSLSP NSSISSNSPR SPPLSPPPVV ISPCAACKIL RRRCADKCVL 60
APYFPPTEPA KFAIAHRVFG ASNIIKFLQE LPECQRSDAV SSMVYEAGAR IRDPVYGCAG 120
AVFQLQKQVN ELQAQLAKAQ AQVVNMQFQQ ANVLALLCMD MDKDKAPSSP PPNSPQSAVD 180
DTFITNSSYL SFMEDINNDT NLGSLWEPLW T
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX616907 | 2e-49 | JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence. |
