 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cotton_A_20510_BGI-A2_v1.0 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
YABBY |
Protein Properties |
Length: 166aa MW: 18394.6 Da PI: 8.6065 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_20510_BGI-A2_v1.0 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 188.4 | 3.5e-58 | 6 | 140 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105
vsvP +s f++vtvrCGhC++llsvn+ ++ q++++++ ++++ +e++ ++ ++ s+ ++ s+ +++
Cotton_A_20510_BGI-A2_v1.0 6 TVSVPCNSAFNIVTVRCGHCANLLSVNMGTSLQTVPSQDA--------QKQQITIDEDHSNKECGSS-SKCNKFSA---VDST 76
69***********************************996........3333333333333222222.22222222...3567 PP
YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++e++r+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
Cotton_A_20510_BGI-A2_v1.0 77 EQEATRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 140
788999999.9****************************************************97 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007275 | Biological Process | multicellular organism development |
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MADLKTVSVP CNSAFNIVTV RCGHCANLLS VNMGTSLQTV PSQDAQKQQI TIDEDHSNKE 60 CGSSSKCNKF SAVDSTEQEA TRMPPIRPPE KRQRVPSAYN RFIKEEIQRI KASNPDISHR 120 EAFSTAAKNW AHFPHIHFGL KLEGSKQAKL DQGYADQGSQ KSNGYC
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |