PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20475_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 360aa MW: 39727.1 Da PI: 6.4544 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 248 | 282 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Cotton_A_20475_BGI-A2_v1.0 248 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 282 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.2E-77 | 10 | 338 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.519 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.2E-17 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 243 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.19E-15 | 244 | 306 | No hit | No description |
CDD | cd00202 | 1.50E-14 | 247 | 294 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-15 | 248 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEAPEFVPGT TCCSQFTPDK PDHFIVEDLL DFSNDDAILT DQTFDSFSAA AHSTDSSSIT 60 PFDTCNSSAF SASQPNLVTG IASRAFNDGH SSADLYVPCD DLAELEWLSN FVDESFSSDD 120 LQKHQLISGI KIRPDESSET GGFQSVLPSQ INDSIDNGDN NHSNNTNNPI FHPDMSVPAK 180 ARSKRSRAAP CNWASRLLVL SPTTSSSEPD IVVPVQPPPP NHPGKKPVKT ISSKKKEGGV 240 ANSDGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS 300 NSHRKVLELR RQKEMLRAQQ HHQQPFMQHH HQNMVFDVSN GDDYLIHQHV GPDFRQLILE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641307.1 | 0.0 | PREDICTED: GATA transcription factor 12-like | ||||
Swissprot | P69781 | 4e-94 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A2P5WMT2 | 0.0 | A0A2P5WMT2_GOSBA; GATA transcription factor | ||||
STRING | Gorai.009G049300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 7e-79 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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