PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_20334_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 363aa MW: 41192.2 Da PI: 10.0826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20334_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C +F ++ ++ Hi+tH Cotton_A_20334_BGI-A2_v1.0 251 YGCPKCLATFYSPKSFAAHIQTH 273 67********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.85	251	278	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	253	273	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAMNFSHSNL ISSTSRFFLS STNSDLGLTL VRDSDIINSN LGPVSHRVRE VNRTYVSLNR 60 VQAHSVLNDV PLLAFPLNPV TTVTEIVRTT RFLTPTSTME RMFASSSRVS PHEMFPTSGV 120 FAQAQPHVRS QPNQLMNMNL FRSENPPMNQ INVRSNVNRE TNFESASGYS LENPMYYDQG 180 LRNFDQMAML SRNLDNMNNS NYNINPSTQR NQPSSNSNFE EVSDENREDY DHPKGYDGRT 240 NSFPGYLKGV YGCPKCLATF YSPKSFAAHI QTHYKHESKE ERRRRMTARL RGRNPRLFWS 300 SHGLTAIPES SKGITKGYST RRKNELADKV ENINIVRMGH GLSTFGATMK APTPSVMIKE 360 EPK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAMNFSHSNL ISSTSRFFLS STNSDLGLTL VRDSDIINSN LGPVSHRVRE VNRTYVSLNR  60
VQAHSVLNDV PLLAFPLNPV TTVTEIVRTT RFLTPTSTME RMFASSSRVS PHEMFPTSGV  120
FAQAQPHVRS QPNQLMNMNL FRSENPPMNQ INVRSNVNRE TNFESASGYS LENPMYYDQG  180
LRNFDQMAML SRNLDNMNNS NYNINPSTQR NQPSSNSNFE EVSDENREDY DHPKGYDGRT  240
NSFPGYLKGV YGCPKCLATF YSPKSFAAHI QTHYKHESKE ERRRRMTARL RGRNPRLFWS  300
SHGLTAIPES SKGITKGYST RRKNELADKV ENINIVRMGH GLSTFGATMK APTPSVMIKE  360
EPK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2VTQ6	0.0	A0A0D2VTQ6_GOSRA; Uncharacterized protein
STRING	Gorai.012G001100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	3e-09	C2H2-like zinc finger protein