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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_20173_BGI-A2_v1.0 |
Common Name | F383_15778 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HB-other |
Protein Properties |
Length: 350aa MW: 40535.4 Da PI: 4.7992 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_20173_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 281 | 327 | 6 | 52 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
+++k q+++Le+++++++ p+ +++ + + ++L+ ++V WF +R
Cotton_A_20173_BGI-A2_v1.0 281 RLKKVQIDTLEKVYRRSKRPTNTMISSIVQVTNLPRKRVVKWFEDKR 327
57899***************************************999 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002229 | Biological Process | defense response to oomycetes |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009682 | Biological Process | induced systemic resistance |
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway |
GO:0010118 | Biological Process | stomatal movement |
GO:0050832 | Biological Process | defense response to fungus |
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway |
GO:2000071 | Biological Process | regulation of defense response by callose deposition |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MASALSVNSS ISVRILQSSS YRGRVSIAQP RSFNLLPAPQ SRRRYTVAFS RRRNNQPAST 60 DKKKRLKKEK KKGLVEEEEE DFEGDPFEAL FKQLEEDLKN DNPDMEDDDD EGDEINEEDI 120 ERLANELAEA FGDFDFEGFS SASNDAEEEV EDDSEEDGND DEEEERPVKL KNWQLRRLAA 180 ALKVGRRKTS IKTLAAELCL DRAVVLKLLR EPPPELLMIS ATLPDEPVKK ELEPEPEPEP 240 MPETKHVETL AFETTMDNVK HEPKVKEPIH VMQQRWSAQK RLKKVQIDTL EKVYRRSKRP 300 TNTMISSIVQ VTNLPRKRVV KWFEDKRNED GVPEHRQPYR RYGSETVFLD
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 41 | 66 | RRRYTVAFSRRRNNQPASTDKKKRLK |
2 | 50 | 64 | RRRNNQPASTDKKKR |
3 | 61 | 71 | KKKRLKKEKKK |
Functional Description ? help
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Source |
Description |
UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX587556 | 3e-99 | JX587556.1 Gossypium hirsutum clone NBRI_GE21695 microsatellite sequence. |
Publications
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- García-Andrade J,Ramírez V,López A,Vera P
Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]
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