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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20140_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 14014.9 Da PI: 9.2461 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3e-13 | 4 | 95 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 f+k lt dv k+ + +p +f+ +h +++ +++t + d sg++We + + +rk+++ v++k W ++v++++L+ gD + Cotton_A_20140_BGI-A2_v1.0 4 FEKYLTEVDVKKQ--VAIPSDFV-QHlpDYEGGRTITFPVHDVSGKVWEnFGYYIRKGDDYpkPVFQKDWHKYVRDKRLRPGDKI 85 7888877777776..8*******.555955556789999*********8466644666655889********************* PP EEEE-SSSEE CS B3 81 vFkldgrsef 90 +F+++++ + Cotton_A_20140_BGI-A2_v1.0 86 IFRVERNGDN 95 ***9887443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-14 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-15 | 2 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-16 | 2 | 88 | No hit | No description |
Pfam | PF02362 | 1.1E-9 | 4 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MPSFEKYLTE VDVKKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGKVWEN FGYYIRKGDD 60 YPKPVFQKDW HKYVRDKRLR PGDKIIFRVE RNGDNGATIY TIAAQKKIEI LGSTIWSSEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468654.1 | 2e-73 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A2P5XQC4 | 7e-82 | A0A2P5XQC4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G061900.1 | 8e-73 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22252 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 3e-06 | ethylene response DNA binding factor 3 |