PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_20140_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 120aa MW: 14014.9 Da PI: 9.2461

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20140_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.2	3e-13	4	95	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 f+k lt dv k+ + +p +f+ +h +++ +++t + d sg++We + + +rk+++ v++k W ++v++++L+ gD + Cotton_A_20140_BGI-A2_v1.0 4 FEKYLTEVDVKKQ--VAIPSDFV-QHlpDYEGGRTITFPVHDVSGKVWEnFGYYIRKGDDYpkPVFQKDWHKYVRDKRLRPGDKI 85 7888877777776..8*****.555955556789999*****8466644666655889***************** PP EEEE-SSSEE CS B3 81 vFkldgrsef 90 +F+++++ + Cotton_A_20140_BGI-A2_v1.0 86 IFRVERNGDN 95 *9887443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.46E-14	2	102	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.9E-15	2	100	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.47E-16	2	88	No hit	No description
Pfam	PF02362	1.1E-9	4	100	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MPSFEKYLTE VDVKKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGKVWEN FGYYIRKGDD 60 YPKPVFQKDW HKYVRDKRLR PGDKIIFRVE RNGDNGATIY TIAAQKKIEI LGSTIWSSEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468654.1	2e-73	PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBL	A0A2P5XQC4	7e-82	A0A2P5XQC4_GOSBA; Uncharacterized protein
STRING	Gorai.002G061900.1	8e-73	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22252	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25730.1	3e-06	ethylene response DNA binding factor 3