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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_20110_BGI-A2_v1.0 |
Common Name | F383_31824 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
TCP |
Protein Properties |
Length: 448aa MW: 48746.2 Da PI: 7.1283 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_20110_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 122.2 | 6.1e-38 | 35 | 154 | 2 | 117 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceae 76
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + +
Cotton_A_20110_BGI-A2_v1.0 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELppwnpetlN--------TT 109
79**************************************************************554443331........22 PP
TCP 77 sssssasnsssg....kaaksaakskksqksaasalnlakesrak 117
+s ++sn++ + + ++++ + + ++s + + nla+ s +
Cotton_A_20110_BGI-A2_v1.0 110 TSIAKTSNQEDQnattATDNDKPYQFHINHSGNLVENLAAGSGTR 154
222222222222111133333334444555555555555544433 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MGDSRHQAAT SSRLGIRHSG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKP AIDELAELPP WNPETLNTTT SIAKTSNQED 120 QNATTATDND KPYQFHINHS GNLVENLAAG SGTRRRTATI MGNEVQSLQQ QEMGDNPNNN 180 SGFLPPSLVS DEIADTIKSF FPLGASSETP SSSIQFQNYP PDLLSRTSSH SQDLRLSLQS 240 FPEPILLHHH HHHAQAATAQ AHHREPVLFS GASPLAGFDG SSAGWEHHHQ HPAEIGRFQR 300 LFAWNNSGAA ADSSGGGGAG GSSGVGGGFI FGTPPPQSLP TAFGQNSQLF SQRGPLQSSN 360 TPLVRAWIDQ PISTTDQHQH QHQHHHHQQH HHHQIPENIH HHAALSGIGF TTPGVFSGFR 420 VPARIQGEED EHDSIANRLS SASSDSHH
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Publications
? help Back to Top |
- Schommer C, et al.
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] - Ju Y, et al.
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] - Challa KR,Aggarwal P,Nath U
Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] - Sun X, et al.
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] - Kubota A, et al.
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] - Vadde BVL,Challa KR,Nath U
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] - Challa KR,Rath M,Nath U
The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]
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