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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19762_BGI-A2_v1.0 | ||||||||
Common Name | F383_13421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 134aa MW: 14870.7 Da PI: 8.7191 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.9e-09 | 59 | 80 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+ tG+C+yGd+Ck+ H+ Cotton_A_19762_BGI-A2_v1.0 59 VCNRFLNTGFCQYGDNCKYFHP 80 5******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.7E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.51E-14 | 4 | 45 | No hit | No description |
Pfam | PF06220 | 5.9E-11 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.286 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-8 | 55 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 59 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-8 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPA ARKRHLQGLQ HLRAKAQWFH SQNAQDLYQT SVPPFSKGVC 60 NRFLNTGFCQ YGDNCKYFHP NNDSRTPNPP LSTAPAGGVV GNGNGMAISW GNLPPSLKPP 120 PEAGYPPLPF VDWG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590223 | 1e-46 | JX590223.1 Gossypium hirsutum clone NBRI_GE25093 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618470.1 | 1e-96 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 4e-43 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0B0PXV5 | 2e-95 | A0A0B0PXV5_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.013G032200.1 | 1e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10474 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-45 | C3H family protein |
Publications ? help Back to Top | |||
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