PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19756_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 298aa    MW: 32402.9 Da    PI: 6.854
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19756_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-18216249134
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                 Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Cotton_A_19756_BGI-A2_v1.0 216 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 249
                                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.1E-7811297IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-14210264IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14212273No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14214247IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.332214246IPR000679Zinc finger, GATA-type
CDDcd002023.61E-14215264No hitNo description
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
PfamPF003203.6E-16216249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQNTHHVFDD FLVMNVMNGA VAGEDFSIDC FLDFNNGEFD EGSVEEEEKN SVSTSYQQRV  60
ADDGSNSNST SFTLSVPDDE IAGLEWVSHF VDDSVPEIPL PCPVFKKETD NHAGTRFEAE  120
TGPVFVKTPS LSSSVPSKAR SKRSKPTVPT WSVGSLPTSE SSSSTASSSS TCSGSSMTST  180
ELANGFRVPP TKNQKKKPVA VQGSGLSSGN PFQRRCSHCQ VQKTPQWRTG PLGAKTLCNA  240
CGVRYKSGRL FPEYRPACSP TFSGDLHSNS HRKVLEMRKR KELAVNDSVE STRLVPSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618282.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U8K5400.0A0A1U8K540_GOSHI; GATA transcription factor
STRINGGorai.013G032900.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-52GATA transcription factor 5