PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_19722_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 53019.8 Da PI: 6.2781 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.6e-10 | 238 | 285 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_19722_BGI-A2_v1.0 238 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 285 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.02E-10 | 232 | 289 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-17 | 232 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-17 | 234 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 234 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 238 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 240 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 480 aa Download sequence Send to blast |
MNTALPEMLQ CSDLTVLERQ RARLKWQEEQ FQQQQQQQQS YFSELSCGAF SSQTNHVQGF 60 QAGFMGGASG DSVLSDMVMA RQVKPDPGLE SPWPELGKVD MAAMGFGPCG YGNGPSFDMN 120 HAISRTSSCP PAVAATKAVE VKGNSEKMAS AVGKESFKKR KVEKLQNSKV VAEDESKRIK 180 ACEDEGEESK ITGPNTNKSS NNKKEASGDA SKENSKVSEV QKPDFIHVRA RRGQATDSHS 240 LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF LSMKLATVNP 300 RLDFSIDNLY AKEVFSSCTT NFPTLEMAPE MANPSYLQFN PIQQVVPCCG VEMGINSPDM 360 TLRRTISAPV SIPDASFLDS SCLTMHQCSA MQQIQHTAIW DVELQNLYNV AFDQGRSTPP 420 FPSQPFAVAQ KPQKWIGEPS SDSEESFVNV KRSDFRADFV FGASTAAAQT LLRVIQTRGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU532258 | 0.0 | EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence. | |||
GenBank | EU532309 | 0.0 | EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence. | |||
GenBank | EU532316 | 0.0 | EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616389.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X1 | ||||
Swissprot | Q8GY61 | 1e-61 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A0B0NAN3 | 0.0 | A0A0B0NAN3_GOSAR; Transcription factor bHLH63-like protein | ||||
STRING | Gorai.013G036400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5947 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-64 | cryptochrome-interacting basic-helix-loop-helix 1 |