PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19663_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 181aa MW: 20186.1 Da PI: 6.3945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19663_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Cotton_A_19663_BGI-A2_v1.0 27 YDCTFCKRGFSNAQALGGHMNIH 49 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	25	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.96E-7	25	55	No hit	No description
PROSITE profile	PS50157	11.344	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
METDQPAPEN PDKASSDEQG ASPARSYDCT FCKRGFSNAQ ALGGHMNIHR RDKAMLKQPS 60 PTHETTTTTQ QSNFDISKII PSYSHTPTSH GKWRWVLQDD GADVRTDRTS DHIVGSQIRQ 120 LPLFDEKPSQ SDQNPRNQVQ EGLEKGFSST QPPLGSEVDL ELRLGPEPHD SSPPKTTKKF 180 F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635153.1	1e-133	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A0D2LXE8	1e-127	A0A0D2LXE8_GOSRA; Uncharacterized protein
STRING	Gorai.001G112700.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-17	C2H2 family protein