PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19406_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 155aa    MW: 17951.7 Da    PI: 10.4759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19406_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.1e-1116102385
                                 EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT CS
                          B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkeg 77 
                                 k l++ dv+   rl++p k ++++   +g+  ++++    d  g++W++ l+ rk + +      vl++GW  +vka+gL+ +
  Cotton_A_19406_BGI-A2_v1.0  16 KDLSKTDVGV--RLSFPMKALKDFqflEGE--NKTEFEAADGIGNRWRFGLSKRKARHSkfhpkPVLSSGWLAYVKAKGLQIN 94 
                                 5665555554..69*******999976333..455788889999*******88666665779999****************** PP

                                 -EEEEEE- CS
                          B3  78 DfvvFkld 85 
                                 D + ++ d
  Cotton_A_19406_BGI-A2_v1.0  95 DRFFLYGD 102
                                 **999943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-139119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-910102IPR015300DNA-binding pseudobarrel domain
CDDcd100177.93E-1113100No hitNo description
PfamPF023627.2E-926102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGVPPLYSET NEIFSKDLSK TDVGVRLSFP MKALKDFQFL EGENKTEFEA ADGIGNRWRF  60
GLSKRKARHS KFHPKPVLSS GWLAYVKAKG LQINDRFFLY GDLDKLSTKK RFRVQAQRKV  120
RRPIKLFGKE ILVEEVWVDI EELEGLKQET SRSIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461286.15e-81PREDICTED: uncharacterized protein LOC105781297
TrEMBLA0A2P5YGG21e-108A0A2P5YGG2_GOSBA; Uncharacterized protein
STRINGGorai.013G039500.12e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2224545