PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19366_BGI-A2_v1.0

Common Name

F383_11675

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 279aa MW: 31051.5 Da PI: 5.2245

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19366_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	40	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL l ++ +K++K++iL +++ +k+L Cotton_A_19366_BGI-A2_v1.0 40 RKVQKADREKLRRDKLNEQFVELGNTLDPD----RPKNDKVTILVDTTQMLKDL 89 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.341	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-11	40	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	40	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.41E-6	40	93	No hit	No description
Pfam	PF00010	1.8E-6	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-5	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDHQWKPNDF SMPAAADLDP SNPEPRQRQE MEATDPIAAR KVQKADREKL RRDKLNEQFV 60 ELGNTLDPDR PKNDKVTILV DTTQMLKDLT AEVNRLRAEC PSLTEESREY QQRLSVMFPW 120 TGIEPSVFVA PPYSYPAPLH VPTGPIAMHP SLQPYSYFLN HGPGAVANPC STYIPYSMEQ 180 PSSQPTSSSH LSFQRDCRSK PMDDQGGSNR DSCDGSNDVV TELELKIPGS STNQGLSAVE 240 TKGKQTEERS MVNSISSSRI QGPRDSASNN LDEVSKSKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016696640.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	9e-47	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0B0N8N5	0.0	A0A0B0N8N5_GOSAR; Transcription factor protein
STRING	Gorai.007G194400.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	6e-49	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]