PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19100_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 398aa    MW: 43437 Da    PI: 8.8609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19100_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.3e-16197242555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Cotton_A_19100_BGI-A2_v1.0 197 HNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 242
                                 9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-19190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18191250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.695192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-16197246No hitNo description
SMARTSM003533.4E-17198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MFNPCNNINQ NLVPVSNHQV ADLTWQYGQQ LAMHGFSGFL PTAPTKPTCR SNDTLESIVH  60
QATYHNHDET PTNTSSIAAS SGGNRSESSS RLPPVSVAAR LTKKRAQPIS DSDQCRKHNI  120
SCGIQKDKAD RSECGSDTFY KIDNDATMVT WGSHDESLQS LKTKTTDVDS GCHDGSESRD  180
ETGRSHPTRR SRAAAIHNLS ERKRRDRINQ KMKALQKLVP NASKTDKASM LDEVIEYLKQ  240
LQAQVKVMSM RSIPPMMLMP LGLHHHQHLQ MSLLGRIMAG MGVNHALGMG MGLLDNNAAT  300
PPNASQSLPS LLHLPPPFLA TALPPMIPSR ATATAAAQSN PNASSSDSIP LPDPSCAFLT  360
QSMNMELYSK MAALYQAQMN RTTETASSPS RSNNIKQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERKRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5813512e-63JX581351.1 Gossypium hirsutum clone NBRI_GE13962 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470587.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A0D2PVV30.0A0A0D2PVV3_GOSRA; Uncharacterized protein
STRINGGorai.001G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-38bHLH family protein