 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_18980_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
LBD |
| Protein Properties |
Length: 184aa MW: 19956.8 Da PI: 8.6104 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_18980_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 126.3 | 1.4e-39 | 13 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearar 70
+CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+al p ++r da+ss+vyeA+ar+r
Cotton_A_18980_BGI-A2_v1.0 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQALqadriklsnlqelPVHQRGDAVSSMVYEANARVR 95
7*********************************************998555555444444455666**************** PP
DUF260 71 dPvyGavgvilklqqqleqlkaelallkee 100
dPvyG+vg i++lqqq++ l+++la++++e
Cotton_A_18980_BGI-A2_v1.0 96 DPVYGCVGAISSLQQQIDALQTQLAMAQAE 125
*************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
MKESGRKQGA APPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQA 60
LQADRIKLSN LQELPVHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDALQTQLA 120
MAQAEVVHLR VRQTASFSHH GFGPGSPSNS GSPSSKLMGS QAKPIFDMDM VVDQASFGES 180
MWSC
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX583811 | 5e-96 | JX583811.1 Gossypium hirsutum clone NBRI_GE16953 microsatellite sequence. |
