PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18878_BGI-A2_v1.0

Common Name

F383_26983

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 353aa MW: 38901.4 Da PI: 7.5296

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18878_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	221	259	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Cotton_A_18878_BGI-A2_v1.0 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.49	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.77E-6	219	263	No hit	No description
SuperFamily	SSF47459	4.97E-10	219	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-7	223	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNRGVLQSSP LQQMTAGNLN WWNINTTMRP PPTTHLQPPP HFLPPSPTTL FPQFTPTPTS 60 SSSSSWNDNS QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ SLHQASNAIS 120 AVDVKQENPN SYVYGHANED FHHQANKPAW SHQIMATSSA LSPKSGVTSS SSKMLEFSGN 180 KADARQPHPE RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG 240 KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNMRQQ QPVQGERNCK FPEDPGQQLN 300 ENSMKRKGGP DQQKECDEEP KKDLRSRGLC LVPVSCTLQV CSDNGADYWA PAL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNRGVLQSSP LQQMTAGNLN WWNINTTMRP PPTTHLQPPP HFLPPSPTTL FPQFTPTPTS  60
SSSSSWNDNS QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ SLHQASNAIS  120
AVDVKQENPN SYVYGHANED FHHQANKPAW SHQIMATSSA LSPKSGVTSS SSKMLEFSGN  180
KADARQPHPE RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNMRQQ QPVQGERNCK FPEDPGQQLN  300
ENSMKRKGGP DQQKECDEEP KKDLRSRGLC LVPVSCTLQV CSDNGADYWA PAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644000.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	1e-100	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0B0PC66	0.0	A0A0B0PC66_GOSAR; Transcription factor bHLH68-like protein
STRING	Gorai.010G073600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]