PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18661_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 152aa    MW: 17500.5 Da    PI: 9.2543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18661_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-101359555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                   +Er RR++++s f +L +llP +    ++K+s  e++ +A+ Y+k+Lq
  Cotton_A_18661_BGI-A2_v1.0 13 RCLVERERRKHMKSLFTKLSSLLPIQ----QTKMSVPEMVDQATAYVKELQ 59
                                5679*********************8....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-13877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.551858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-81063No hitNo description
PfamPF000101.6E-71459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-81464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDNGNVASMR ISRCLVERER RKHMKSLFTK LSSLLPIQQT KMSVPEMVDQ ATAYVKELQG  60
RLEQYQGTKV QLERTCEMRK RKRMIRPVLN VRDLGYNLEV NLITGLNLEF ALSDFINILQ  120
EEGADILSAT CHQAGDKAIY TILCQIIRLK EV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5815022e-61JX581502.1 Gossypium hirsutum clone NBRI_GE14150 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721031.11e-105PREDICTED: transcription factor ORG2-like
RefseqXP_017613975.11e-105PREDICTED: transcription factor bHLH125-like
TrEMBLA0A1U8M2J51e-103A0A1U8M2J5_GOSHI; transcription factor ORG2-like
STRINGGorai.012G171500.14e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-20bHLH family protein