PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18578_BGI-A2_v1.0
Common NameF383_27241
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 705aa    MW: 78502.8 Da    PI: 9.71
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18578_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07597646147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                 r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Cotton_A_18578_BGI-A2_v1.0 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646
                                 6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.91E-6400486IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733592651IPR017930Myb domain
SMARTSM007172.0E-7596649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10597647IPR009057Homeodomain-like
CDDcd116603.09E-17598648No hitNo description
SuperFamilySSF466891.35E-15598679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MELQKRLDYG FNGYQVPATP RATRSARKRV PFKKRVEDNR ISAFDLLATV AGKLLLDKES  60
TPVFSNTSSA EDPSKVEKNT VKEERRDGSQ SSKLETCDQY SNDREFIVSQ LVSQTNDLRS  120
CSFRESPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNETGCLPCK VETGPFLCGA  180
SGGRIKLEFE NKGPIHEELD RTDKLSIREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS  240
YGFNNYLSSF PGKRDDLKVV SRDDDEKSSR CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY  300
LKVAPRLNDV TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS  360
EGISDSPEQS INGNASGVYP KMRGVTGESP SLADQRKSFH SRDSHVKFRI KSFRVPELFI  420
EIPESATIGS LKRTVMEAVT AILGGGLRIG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG  480
FSLEPNPSQI FPSHCPGGSP LTFPCDTPLP LARYPATPGL VARVTHDPSH EPHMPNLGHF  540
VESDHDSAPS PTDMSLDKST TDSKALVAVP AISVEALDVV PAHRKSKRSE VVQRRIRRPF  600
SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QAKQQLKQQQ QPESCLLLYN SNSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-575816871107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5975509e-36JX597550.1 Gossypium hirsutum clone NBRI_GE34460 microsatellite sequence.
GenBankJX6126339e-36JX612633.1 Gossypium hirsutum clone NBRI_GE55237 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638728.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_017638729.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-144TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0B0PB830.0A0A0B0PB83_GOSAR; Telomere repeat-binding 5-like protein
STRINGGorai.003G130700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2