PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18465_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 331aa    MW: 35993.3 Da    PI: 8.5861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18465_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000191113223
                                 EETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 +Cp Cg+ F   +nL+ H+ + H
  Cotton_A_18465_BGI-A2_v1.0  91 SCPECGEIFMKAENLELHQAVrH 113
                                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.41190118IPR007087Zinc finger, C2H2
PROSITE patternPS00028092113IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-22115330No hitNo description
Gene3DG3DSA:3.90.228.101.2E-19117329IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRCSGSLCSN TKIMERPVTA SPELNKKRAS LGSVKAPVQH EPNGVVISSS NVGSFRGLPF  60
TRFSGCYECR MVVDPVLGMA KDPSLRTTIR SCPECGEIFM KAENLELHQA VRHAVSELGS  120
EDTSKNIVEI IFQSSWLKKQ APICQIDRIL KVHNTPKTIS KFEEYRDSIK SKATKHPKKH  180
PRCIADGNEL LRFHCTTFAC SLGLNGSSNL CNSSPNCNVC SIIKNGFKVA QELGNGGGPN  240
GKGILTTATS GKAHDMAAAV EEDNGKQENR AMLVCRVIAG RVKKNMEGSL EDYDSVTVAG  300
GDVGAYSNLD ELYVFNPKAI LPCFVVIYRG F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644831.10.0PREDICTED: uncharacterized protein LOC108485493
TrEMBLA0A1U8PTC30.0A0A1U8PTC3_GOSHI; uncharacterized protein LOC107962489
STRINGGorai.010G048000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-82C2H2-like zinc finger protein