PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18412_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 279aa    MW: 31169 Da    PI: 10.1778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18412_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.94.8e-09223241321
                                 -SS-EEEEEEE--TT-SS- CS
                        WRKY   3 DgynWrKYGqKevkgsefp 21 
                                 D ++WrKYGqK++kgs++p
  Cotton_A_18412_BGI-A2_v1.0 223 DDHSWRKYGQKPIKGSPYP 241
                                 99***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.0E-17182219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-8209241IPR003657WRKY domain
PROSITE profilePS5081111.199216279IPR003657WRKY domain
SuperFamilySSF1182907.19E-7218242IPR003657WRKY domain
SMARTSM007740.0056221252IPR003657WRKY domain
PfamPF031062.3E-5223241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNPRWDLKVH EVAESSFRRA NHLFSCICDG SQKRSNQEIS LMAQDTVNGF RKLLSLLDGS  60
MQSECKRIRK GPLPKSHNVN PAELMDSPSF ASQSSICKPS QPHILGQFVS PQFNQSNTGL  120
IPRNVVVLPN LIMGLQHSST LPTMMPMFDK KLIPWSSSEI VVPQDESCML LSKRKIGVGS  180
EEASTKCAAS TGGCHCSKRR KLRIKKTIRV PAISNKPSDI PPDDHSWRKY GQKPIKGSPY  240
PSFNELALLE NSQFWVSLQL CRARTFGEFV VLQSKFVNA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697960.0KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625534.11e-178PREDICTED: probable WRKY transcription factor 15 isoform X2
TrEMBLA0A068LEN71e-176A0A068LEN7_GOSHI; WRKY transcription factor 28
TrEMBLA0A1U8JHP51e-176A0A1U8JHP5_GOSHI; probable WRKY transcription factor 15
TrEMBLA0A2P5XXA81e-176A0A2P5XXA8_GOSBA; Uncharacterized protein
STRINGGorai.004G199500.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-20WRKY DNA-binding protein 21