PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17926_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 1056aa    MW: 119807 Da    PI: 6.7312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17926_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.72.1e-1272035721373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA+a+ ++++ + ++l+a+ ++ +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    +e l+++++
  Cotton_A_17926_BGI-A2_v1.0 203 LRQLLFACAKALFENKMDEFDELIAKAKDAVSIAGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---GKELLSYMHM 282
                                 689******************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P+lkf++++aN aI ea  +e+++HiiDf+i qG+QW++LlqaLa+Rp g+p++RiTg+++p s+  +   le++g+r
  Cotton_A_17926_BGI-A2_v1.0 283 LYEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWVTLLQALAARPCGAPRVRITGIDDPVSKyaRGGGLEAVGRR 365
                                 *******************************************************************99999999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+ + e++++p+ef+  v     d++ ++L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv +++eqe++
  Cotton_A_17926_BGI-A2_v1.0 366 LSALSEKFNIPVEFHG-VPVFAPDVTRDMLNLRPGEALAVNFPLQLHHTSDESVDVNNPRDGILRLVKSLSPKVTTLIEQESN 447
                                 ****************.688899************************************************************ PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++Fl rf+e+leyy a+f+s++++lpr+ +eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF+++pls
  Cotton_A_17926_BGI-A2_v1.0 448 TNTAPFLPRFIETLEYYLAIFESIDETLPRDRKERINVEQQCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLS 530
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +++++ +++llr ++ + y++ e++g+++l Wkdr+L+s+SaW
  Cotton_A_17926_BGI-A2_v1.0 531 SYVNSVIRSLLRCYS-KHYTLVEKDGAMLLRWKDRNLISASAW 572
                                 ************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.033177554IPR005202Transcription factor GRAS
PfamPF035147.2E-125203572IPR005202Transcription factor GRAS
PfamPF013971.2E-20641714IPR001906Terpene synthase, N-terminal domain
Gene3DG3DSA:1.50.30.103.9E-38641754IPR001906Terpene synthase, N-terminal domain
SuperFamilySSF482391.57E-30641739IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
CDDcd0068406461053No hitNo description
SuperFamilySSF485762.79E-1037401054IPR008949Isoprenoid synthase domain
PfamPF039362.3E-97745999IPR005630Terpene synthase, metal-binding domain
Gene3DG3DSA:1.10.600.106.0E-1217551054IPR008949Isoprenoid synthase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0000287Molecular Functionmagnesium ion binding
GO:0010333Molecular Functionterpene synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MDSHQLFGLS NSTCYSTISS IPNRLFSSSK SDIRNSPNSP FSTKFDCYTY TTPSDSQEQH  60
SSTDKLSGLS PSSNSSLESN NYFHPLSPPL NCRGESLPLY SGGSSYTQYA NLSHQMIYTS  120
QELDSALRAP DRDKEVTTPS VSRPRETGPL SRTWSRESQG SFVLQPQTFF VSRHRQSAEA  180
VHVEKRQKAI EDLSLHGIPP GNLRQLLFAC AKALFENKMD EFDELIAKAK DAVSIAGEPI  240
QRLGAYMVEG LVARKEASGS NIYRALRCRE PEGKELLSYM HMLYEICPYL KFGYMAANGA  300
IAEACRNEDH IHIIDFQIAQ GTQWVTLLQA LAARPCGAPR VRITGIDDPV SKYARGGGLE  360
AVGRRLSALS EKFNIPVEFH GVPVFAPDVT RDMLNLRPGE ALAVNFPLQL HHTSDESVDV  420
NNPRDGILRL VKSLSPKVTT LIEQESNTNT APFLPRFIET LEYYLAIFES IDETLPRDRK  480
ERINVEQQCL ARDIVNIIAC EGKERVERHE LLGKWKSRLT MAGFRQYPLS SYVNSVIRSL  540
LRCYSKHYTL VEKDGAMLLR WKDRNLISAS AWHCTTEIHT MIQSFLAASL ACKLLSTTAI  600
DGVPAKKLLG SYGLGHGLSY DRVIHMAWRH DRVSSESFLV VQVNAFNKFK DEAGNFKPSL  660
TSDVQGLLEL YEASYMRVHG EDILDEAISF TTAQLTLALP TLDHPLSEQV GHALKQSIRR  720
GLPRVEARNF ISIYQDLESH NKSLLQFAKI DFNLLQLLHR KELSEICRWW KDLDFTRKLP  780
FARDRVVEGY FWIMGVYFEP QYSLGRKMLT KVIAMASIVD DTYDSYATYD ELIPYTNAIE  840
RWDIKCMNQL PDYMKISYKA LLDVYEEMEQ LLANQGRQYR VEYAKKAAKW THQNYKPTFE  900
EFRDNALPTS GYAMLAITAF VGMGEVITPE TFKWAANDPK IIKASTIICR FMDDIAEHKF  960
NHRREDDCSA IECYMEQYGV TAQEAYNEFN KHIESSWKDV NEEFLKPTEM PTPVLCRSLN  1020
LARVMDVLYR EGDGYTHVGK AAKGGITSLL IDPIQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3g4d_A0.06411056128554(+)-delta-cadinene synthase isozyme XC1
3g4d_B0.06411056128554(+)-delta-cadinene synthase isozyme XC1
3g4f_A0.06411056128554(+)-delta-cadinene synthase isozyme XC1
3g4f_B0.06411056128554(+)-delta-cadinene synthase isozyme XC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGAU275350.0U27535.1 Gossypium arboreum (+)-delta-cadinene synthase isozyme A mRNA, complete cds.
GenBankX964290.0X96429.1 Gossypium arboreum mRNA for cadinene synthase (cad1-A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618593.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A1U8ICZ50.0A0A1U8ICZ5_GOSHI; scarecrow-like protein 21
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-170scarecrow-like 5