PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_17824_BGI-A2_v1.0 | ||||||||
Common Name | F383_18975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 49938.6 Da PI: 6.6262 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.6e-12 | 43 | 68 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG++C+F+H++ Cotton_A_17824_BGI-A2_v1.0 43 DEADCIYYLRTGFCGYGSKCRFNHPR 68 6799********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Cotton_A_17824_BGI-A2_v1.0 90 QPVCQYYMRTGACKFGASCKYHHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 33.4 | 7.5e-11 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ Cotton_A_17824_BGI-A2_v1.0 135 GEKECSYYVKTGQCKFGTTCKFHHP 159 7899********************8 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 295 | 321 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Cotton_A_17824_BGI-A2_v1.0 295 PGQPECQYYMKTGRCKYGSSCRYHHPP 321 5789*********************97 PP | |||||||
5 | zf-CCCH | 27.5 | 5.3e-09 | 344 | 367 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G+ C+F H++ Cotton_A_17824_BGI-A2_v1.0 344 PTCTHYTQRGMCKFGAACRFDHPM 367 78********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.4E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 44 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-8 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 139 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-7 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-10 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 300 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 344 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 344 | 367 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 346 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MERDPESDPQ PEWNTQGPET GLEEPVCRLG LEGGSESYPE RPDEADCIYY LRTGFCGYGS 60 KCRFNHPRDR AGVMGAGRGG VGEYPERAGQ PVCQYYMRTG ACKFGASCKY HHPKQGGGSV 120 SSVPLNYYGY PLRPGEKECS YYVKTGQCKF GTTCKFHHPA PPAMQVPAPS PAPQVAPAPA 180 PTPMPAPTMY STVQSPSGPS SQQYGVVMAR PPLMPGSYVQ GPYGPLLLSQ GVPSWNPYPG 240 PVGYGTQPTV PSSSTFGATP LSPSATAYTG SHQFVPSSFE PSSNIQEEVS FPERPGQPEC 300 QYYMKTGRCK YGSSCRYHHP PEVFAPKADV ILSPLGLPLR PGAPTCTHYT QRGMCKFGAA 360 CRFDHPMGTL SYSPSASSLA DMPVAPYPVG TTIGTLAPSS SSSELRPELL SGSSKDPAPA 420 LMSSSVSASS EPVGSVFSEG APVPHSTTQQ SSWSSAPSTG GGSDDDEPHT SS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642683.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-149 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A0B0MC14 | 0.0 | A0A0B0MC14_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.002G027000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-127 | C3H family protein |
Publications ? help Back to Top | |||
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