PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17743_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 277aa    MW: 30824.2 Da    PI: 4.9619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17743_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.5e-28104165159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+ dp+++++ Y+g+H+++
  Cotton_A_17743_BGI-A2_v1.0 104 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDGDPTIFDVSYRGRHTCS 165
                                 59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.00999162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-27100166IPR003657WRKY domain
SuperFamilySSF1182905.89E-25103165IPR003657WRKY domain
SMARTSM007747.6E-40104166IPR003657WRKY domain
PfamPF031063.1E-26105164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEEWEQKCLI NELLQGRELA MQLQAHLNLP SCNETRELLL QQIQASYDKA LSLLHYKATG  60
TSDTIDPPPQ SLPVRDAATV QRKSLPRWTH QVRVGPGTAM EGNLDDGFSW RKYGQKDILG  120
AKYPRGYYRC THRNVQGCLA TKQVQRSDGD PTIFDVSYRG RHTCSNNNQE QGTSTIEPYQ  180
QQQHIGNQTC PLFPNYLSLN IKVENDVGDG NYETGNLSPT STCPNPTGVM NNGSTSVAIE  240
SEFTEIIQAA PTVGLEFPFG NAGLDPNFTF DDNGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-2098164268OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697820.0KF669782.1 Gossypium hirsutum WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636937.10.0PREDICTED: probable WRKY transcription factor 53
SwissprotQ8H0Y84e-49WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A2P5WML50.0A0A2P5WML5_GOSBA; Uncharacterized protein
STRINGGorai.008G270600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-51WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]