PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17599_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 196aa    MW: 21717.6 Da    PI: 8.7127
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17599_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.35.6e-312175358
                 ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                                 vrYkeClkNhA+++Gg+a+DGCgEfmp+ geeg+ +al C+AC+CHRnFHR+e+e
  Cotton_A_17599_BGI-A2_v1.0 21 VVRYKECLKNHAVAIGGNATDGCGEFMPN-GEEGSLEALICSACNCHRNFHRKETE 75
                                69**************************8.999********************987 PP
2Homeobox14.18e-05129185153
                                 TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                 +r Rt+f++ q e + ++ e    + ++++++  ++  +++g++ r+ kvW +N ++
  Cotton_A_17599_BGI-A2_v1.0 129 KRFRTKFSQAQKEKMLSFAEkagwRIQKLDENVVQQFCQEIGIKRRVLKVWMHNNKQ 185
                                 789***********987655666678****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-222275IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.8E-292274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-302373IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.9262473IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.0E-29119188IPR009057Homeodomain-like
SuperFamilySSF466893.09E-19122186IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-26128185IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSNNKPISTS GDGGDNCNKV VVRYKECLKN HAVAIGGNAT DGCGEFMPNG EEGSLEALIC  60
SACNCHRNFH RKETECSGCC PSEFGGELML GHLQSYMLRS SPQPMTVSYK GGGSIPSETN  120
EKDDGKVRKR FRTKFSQAQK EKMLSFAEKA GWRIQKLDEN VVQQFCQEIG IKRRVLKVWM  180
HNNKQSFANK NNVSAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231291861875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726068.11e-146PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_017614752.11e-146PREDICTED: zinc-finger homeodomain protein 4-like isoform X2
SwissprotO647228e-64ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A1U8MKL41e-145A0A1U8MKL4_GOSHI; zinc-finger homeodomain protein 4-like
TrEMBLA0A2P5WAC81e-145A0A2P5WAC8_GOSBA; Uncharacterized protein
STRINGGorai.012G046200.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-66homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]