PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17537_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 309aa    MW: 34517 Da    PI: 9.4833
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17537_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.4e-1632123187
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                 +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s+
  Cotton_A_17537_BGI-A2_v1.0  32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLTSS 114
                                 7****************************************99999**************************9999888899* PP

                    trihelix  79 cpyfdqlea 87 
                                 +p+f++l+a
  Cotton_A_17537_BGI-A2_v1.0 115 WPFFERLDA 123
                                 ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2630124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MADLTDSVMP SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK  60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LTSSWPFFER  120
LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP  180
QKRPAVDDGY FKRNYSAVAA AAAAAAAESD EEEGEESEGE ESEGEGEERE GMKRLARALE  240
RFGQVYERVE GEKLRQMVEL EKQRMQFAKD LEVQRMRMFM DTQVQLEKIK RGKRSSGSSG  300
WSGSGFVYC
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649571.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D2UNL70.0A0A0D2UNL7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8L9J10.0A0A1U8L9J1_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.011G039600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-42sequence-specific DNA binding transcription factors