PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17491_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 413aa    MW: 45353.3 Da    PI: 5.2915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17491_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08321361954
                                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Cotton_A_17491_BGI-A2_v1.0 321 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 361
                                 69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14317378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12320375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5321361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-5334366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDGLRWDGPE IEAKSLPVWN NERNDMEDSY FLIPNSLNSF MYGGKMDDLP EDIFYQIQEL  60
QKSGNLEDAL QQGLFSSPLM SRAYGFSTLN GSVSDFGMPV HSQGINGGGA TTTGSLESLD  120
CLISATNSNT DTSVEDDGIS MIFSDCKNLW NFAASSAVSS GSENNGSNTG RNGHEEIVSQ  180
SSSDRCINNE NLSQTKSSNS SKRKNDQTEL TFGPNCGYFN LLHTDLSAAE GGFKLFPDNP  240
PKAKKIRSEK HSSSSNINFQ QPASSSVSSS IEEPDPEAIA QMKEMIYRAA AFRPVNLGLE  300
VVEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQKLVP GGSKMDTASM LDEAANYLKF  360
LRSQVKALEN LGNKLDTMNA PPPSNIAFNH SLPMQTHSFP LLNPNDHIHH SQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5779741e-89JX577974.1 Gossypium hirsutum clone NBRI_GE9901 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648480.10.0PREDICTED: transcription factor bHLH87
RefseqXP_017648481.10.0PREDICTED: transcription factor bHLH87
RefseqXP_017648482.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D23e-85BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1U8IJN60.0A0A1U8IJN6_GOSHI; transcription factor bHLH87-like
STRINGGorai.011G069200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]