PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17362_BGI-A2_v1.0
Common NameF383_24632
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 859aa    MW: 94091.6 Da    PI: 4.6811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17362_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-5491351127
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++g
  Cotton_A_17362_BGI-A2_v1.0   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKG 90 
                                 699************************999.99***************6447888888************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                 yWkatgkd++++s k++l+g+kktLvfykgrapkge+t+W+mheyr
  Cotton_A_17362_BGI-A2_v1.0  91 YWKATGKDRTIKS-KKSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135
                                 *************.899****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-624159IPR003441NAC domain
PROSITE profilePS5100557.8569159IPR003441NAC domain
PfamPF023658.6E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MEVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGERTNWI MHEYRPTTRE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA  180
MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM  240
VEKYPLLGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLSL FVDSPYANDF GHDQNGFHFQ  300
DGTSEQDVSF PFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKP PPPEISYLKE  360
NGRPADTDTE MPQLQFGTDV GARRWLGGPI DNNQSLQMQT SFEPTHTQPA FYNQEYRTRN  420
ISGLGNYSVG QGTFTDSAMG NINNLQQLTS LKIHVNSGGD LGGDIGMKTG TCQPLKQLNS  480
ENFGTRGAGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDGGKMMST  540
GLVEEEEVQS ALTEVTEAEA AEQTSSSDES EKNIVNQVTA PRRIHLQTKL STGAMKGSAG  600
CVNGGNMTSP GLVEEVQSAL TEVTEAEAAG LTSSSDELEK NIVNQGTAPR RIRLQINLST  660
GPMKGSAGCV DGGSMTSPGL VEEEVQSALT EVTEAEAAGQ TSSSDESEMN IVNQAIAPRR  720
IRLQLSTGPM NGSAGCIDGG NMTSPGLGKE EVQSALTEAT EDEATGQISS SCKTSSSDES  780
EVENRFLKFE GSRDIADESY SKPRLRVKQV DEQHSCSQKG PSLHLKPAPA LHRPNSLLVP  840
GIAIFTITLL FALFMGIWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46915915168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649421.10.0PREDICTED: NAC domain-containing protein 14 isoform X2
TrEMBLA0A0B0MJT20.0A0A0B0MJT2_GOSAR; NAC domain-containing 74
STRINGGorai.008G261400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-135NAC transcription factor-like 9