PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 82aa MW: 9348.2 Da PI: 11.3647

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17196_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.6	2.5e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s Cotton_A_17196_BGI-A2_v1.0 9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLHHFAS 59 68**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.076	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-28	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.78E-35	2	60	No hit	No description
PRINTS	PR00404	6.2E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLHHFASS 60 RSVPFLFLLV RKKLLTVLTY FH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-19	1	60	1	60	MEF2C
5f28_B	4e-19	1	60	1	60	MEF2C
5f28_C	4e-19	1	60	1	60	MEF2C
5f28_D	4e-19	1	60	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675598.1	1e-33	PREDICTED: MADS-box transcription factor 23-like
Refseq	XP_017617788.1	1e-33	PREDICTED: MADS-box transcription factor 23-like
Swissprot	A2RVQ5	2e-27	AGL16_ARATH; Agamous-like MADS-box protein AGL16
Swissprot	Q6VAM4	6e-28	MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBL	A0A1U8IGX1	2e-32	A0A1U8IGX1_GOSHI; MADS-box transcription factor 23-like
STRING	Gorai.013G053800.1	5e-33	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-23	AGAMOUS-like 21

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]