PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17020_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 550aa    MW: 62062.4 Da    PI: 5.9693
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17020_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.82.8e-911935493374
                        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 e L+++A++++++dl+laq +L rl+++ +sp+g+p+qR+ +yf+eAL++  ++  s      p++ +s+++ ++++ a+k f
  Cotton_A_17020_BGI-A2_v1.0 193 EELIRAANCFDTHDLQLAQVILDRLHQRlRSPSGKPLQRASFYFKEALQSLFTG--S--TWPNPVRLSSWSEIVQTIEAYKSF 271
                                 689************************99************************9..2..2234777788888*********** PP

                        GRAS  85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerL 165
                                 s + Pi+ f h+t+Nqa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e     e++ ++++L
  Cotton_A_17020_BGI-A2_v1.0 272 SGINPIPMFNHFTTNQALLEALDGSaPLIHIIDFDIGFGGQYASLMREMAERNdHSRKFIRITAVVPEE--YGFETRLIEDNL 352
                                 *************************7889************************556669********66..99999******* PP

                        GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..a 246
                                 ++fA++l+++f++++++  ++e+++++++++ +gE++a+ l+ +++r l   +++    +++++ ++++sP vvv+v++e  +
  Cotton_A_17020_BGI-A2_v1.0 353 NQFAQALRLRFQIEFVLLPTFETMSFKAFKFINGEKTAILLSPSIFRCL--GLQV----TAFVSDLRRISPSVVVFVDSEvwM 429
                                 ***************9999*****************************9..3333....56*******************665 PP

                        GRAS 247 dh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                 +  +++sF + f+++le+y+++f+sl+a      e+ +k+E  ll+++i ++v ++ +        +  Wre + eaG+++v+
  Cotton_A_17020_BGI-A2_v1.0 430 ESgTTTSFRKNFVNCLEFYAMMFESLDAA---GGEWVKKIETLLLRPRIFSAVEAAART------AAPAWREVFCEAGMRAVR 503
                                 666778********************998...689******************998887......7899************** PP

                        GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ls+ a  qa++ll+kv+++g++v +++++lvl+W++ +L ++S+Wr
  Cotton_A_17020_BGI-A2_v1.0 504 LSQLADFQAESLLQKVQVRGFHVAKRQAELVLCWHKTALSATSVWR 549
                                 *********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.528165529IPR005202Transcription factor GRAS
PfamPF035149.8E-89193549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MRVPVCSPQA NHYPIPKPDI NNNNITITAG NITFLNSSVP ASSCEPTLDL DLRRSPSSAV  60
TENPVSNPAD NSNCFSVSGP HQQQAGLEWD EHVLRNMDWD AILKDFGLDD ESVPATKTIP  120
PQVINPRLDN HIQNVPELTS CELTHHPLHS DFNLYESYSG LNQNPSHNNY FDVSNTCNFH  180
NVGNFNLGFD FLEELIRAAN CFDTHDLQLA QVILDRLHQR LRSPSGKPLQ RASFYFKEAL  240
QSLFTGSTWP NPVRLSSWSE IVQTIEAYKS FSGINPIPMF NHFTTNQALL EALDGSAPLI  300
HIIDFDIGFG GQYASLMREM AERNDHSRKF IRITAVVPEE YGFETRLIED NLNQFAQALR  360
LRFQIEFVLL PTFETMSFKA FKFINGEKTA ILLSPSIFRC LGLQVTAFVS DLRRISPSVV  420
VFVDSEVWME SGTTTSFRKN FVNCLEFYAM MFESLDAAGG EWVKKIETLL LRPRIFSAVE  480
AAARTAAPAW REVFCEAGMR AVRLSQLADF QAESLLQKVQ VRGFHVAKRQ AELVLCWHKT  540
ALSATSVWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2122554936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648430.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-167SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U8IK680.0A0A1U8IK68_GOSHI; scarecrow-like protein 15
STRINGGorai.011G102400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-155GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]