PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17001_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 316aa MW: 33897.6 Da PI: 9.0224

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17001_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	58	117	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Cotton_A_17001_BGI-A2_v1.0 58 HHQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 117 57899*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	57	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.6E-33	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MIQELLGGSS CLNFGGERKI SINGSILEGT PTSSPSPSSS SSSATTSSTT NSSNPENHHQ 60 NLRCPRCDSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKNKSTTGV 120 STSLGKSSSS KMKTVVSEIG RSGFDHELQS TPILWTSAAQ TSHLLSNLTS MRATLNPKPN 180 TLSNPVSIKE EVSLLGSQVM NEPVVAAAAL NARTLGLDLV NPFWKNNQHH AQQQQNNNGF 240 LVGEVQNTGI QELYQRLKSS SSYYSDTSAV ILSNVASSSS TSILESAPVA GGELGYWNPA 300 FSSSWSDLPT TNGAYP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964002	2e-32	JX964002.1 Gossypium hirsutum clone NBRI_TRANS-271 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648193.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1U8KCH2	0.0	A0A1U8KCH2_GOSHI; dof zinc finger protein DOF5.1-like
STRING	Gorai.011G104200.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-34	OBF binding protein 4