PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16993_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 360aa    MW: 41620.6 Da    PI: 5.6967
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16993_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35471392103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+++i++d++++ ++sws+ g+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++
  Cotton_A_16993_BGI-A2_v1.0  47 FLTKTFDIVDDPSTNYIVSWSRAGSSFVVWDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKTDPDK---------WEFANE 120
                                 9***************************************************************9998.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  F +g+k+ll++i+r+k++
  Cotton_A_16993_BGI-A2_v1.0 121 GFLRGHKHLLKNIRRRKTT 139
                                 ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-3442136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6043136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNPYFPVKEE YPNSSYSQSD DDPPVMMMGP APPQPMEGLH DSGPPPFLTK TFDIVDDPST  60
NYIVSWSRAG SSFVVWDPHA FSTNLLPRYF KHNNFSSFVR QLNTYGFRKT DPDKWEFANE  120
GFLRGHKHLL KNIRRRKTTS QPPPSQQPLG PCVEVGRFGV DGEVGRLKRD KQVLMMELVK  180
LRQQQQSTRA YIQAMEERLQ GTEKKQQQMM SFLARAMQNP AFLRQLMQQK EKRKELEEAM  240
SKKRRRPIDQ RHVGQSSRDS EGINPVKTEP PEYGEYGYQV TELEALALEM QGYGRARREQ  300
EEPQDELQHG HGHDRELDEG FWEELLNERF EGELDIPEGG EDEDVNVLAD RLGYLGSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254213915123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024500.0KJ702450.1 Gossypium hirsutum heat shock transcription factor (HSF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741767.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_017623917.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-130HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8NS090.0A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRINGGorai.004G076900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-132heat shock transcription factor A6B