PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_16694_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 937aa MW: 107425 Da PI: 4.898

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16694_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51774	44.542	10	90	IPR011684	Protein Networked (NET), actin-binding (NAB) domain
Pfam	PF07765	1.7E-34	11	84	IPR011684	Protein Networked (NET), actin-binding (NAB) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005886	Cellular Component	plasma membrane
GO:0003779	Molecular Function	actin binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MLQKVASNAY SWWWASHIRT KQSKWLEQNL HDVEEKVSNM LEIIDDDGDS FAQRANMYYR 60 KRPELLAIVE DTYRAYRALA ERFDYLSRDL QSANRTIATV FPDQVPYSLH DEDDENSCLV 120 LTSSSLNKSK SLKPGSRVPS PKTDFRSQSM LLLRKGQLKK AFSSAQAASS LNSGLSKEEA 180 LEEINKLQKE ILEMQTEREL VKNSYEQGYK KLCEIENDIT EKQKRIYSLQ DEYDIRSAID 240 DNEARILMAN RVLKTCQESL VKLQETHEQS TEEGRVESKR IKKVNEAFEA LRKKFNSPQT 300 DQQKQKKASS ARDVDNMVYE FNSAEKGREY MELLQKEIEE KLELDSSSSL TMSQLADKID 360 DLVQRVVNME TAVFSENASV KRLKSDADEL QEHVKSLEED EEVLAEGSDS MEQRISVLEG 420 ELSGVKELLK TIIEQNNSLK AHFTAASCDI NHLSVNLHAV KMDEEVENAE LSEEGKPKVD 480 AKPNRKTKEY CIELVPRDSP ALGTESEMEE KDEDFSAEGI DTVNSESRNK FDVDSTKDSE 540 VINEFKDEKK SLSKTASCTT DTENPKVETE EEELPNWRKL YLSGLDEREK VLLDEYSSVL 600 HNYKDVRKKL KEVDQKNRDS FYELASQIKE LKSALAARDE EIQSSRQHLS FIDENKNGNL 660 SEYEASHAIM SPESTLTGSI PASPVAAGEK SKGDAMQPRS LTRSRSILTV EDKIRSDIDE 720 LLEENLAFWL RFSTCFHQIQ KYQNSVKDLK AELSKMRERK KQEAGKEEPV GSEARPIYAH 780 FREIKTELTL WLENNAVLKD EVQCRYSSLC KIQEEIERIS NVSGHEGEPQ FNGYQAAKFQ 840 GEIINMKQEN NKVSNELNAG FDCVKQLKEE VENLMVELDK EIEAATSKNQ QSVSRSRSRI 900 PLRSFLFGIK LKNKWQQKGP SMFACGHPTL QRQYSYL

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MLQKVASNAY SWWWASHIRT KQSKWLEQNL HDVEEKVSNM LEIIDDDGDS FAQRANMYYR  60
KRPELLAIVE DTYRAYRALA ERFDYLSRDL QSANRTIATV FPDQVPYSLH DEDDENSCLV  120
LTSSSLNKSK SLKPGSRVPS PKTDFRSQSM LLLRKGQLKK AFSSAQAASS LNSGLSKEEA  180
LEEINKLQKE ILEMQTEREL VKNSYEQGYK KLCEIENDIT EKQKRIYSLQ DEYDIRSAID  240
DNEARILMAN RVLKTCQESL VKLQETHEQS TEEGRVESKR IKKVNEAFEA LRKKFNSPQT  300
DQQKQKKASS ARDVDNMVYE FNSAEKGREY MELLQKEIEE KLELDSSSSL TMSQLADKID  360
DLVQRVVNME TAVFSENASV KRLKSDADEL QEHVKSLEED EEVLAEGSDS MEQRISVLEG  420
ELSGVKELLK TIIEQNNSLK AHFTAASCDI NHLSVNLHAV KMDEEVENAE LSEEGKPKVD  480
AKPNRKTKEY CIELVPRDSP ALGTESEMEE KDEDFSAEGI DTVNSESRNK FDVDSTKDSE  540
VINEFKDEKK SLSKTASCTT DTENPKVETE EEELPNWRKL YLSGLDEREK VLLDEYSSVL  600
HNYKDVRKKL KEVDQKNRDS FYELASQIKE LKSALAARDE EIQSSRQHLS FIDENKNGNL  660
SEYEASHAIM SPESTLTGSI PASPVAAGEK SKGDAMQPRS LTRSRSILTV EDKIRSDIDE  720
LLEENLAFWL RFSTCFHQIQ KYQNSVKDLK AELSKMRERK KQEAGKEEPV GSEARPIYAH  780
FREIKTELTL WLENNAVLKD EVQCRYSSLC KIQEEIERIS NVSGHEGEPQ FNGYQAAKFQ  840
GEIINMKQEN NKVSNELNAG FDCVKQLKEE VENLMVELDK EIEAATSKNQ QSVSRSRSRI  900
PLRSFLFGIK LKNKWQQKGP SMFACGHPTL QRQYSYL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606116.1	0.0	PREDICTED: protein NETWORKED 2A-like
TrEMBL	A0A0D2UV26	0.0	A0A0D2UV26_GOSRA; Uncharacterized protein
STRING	Gorai.009G279300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4169	3	4