PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 516aa MW: 57640.9 Da PI: 6.8737

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16593_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50	4.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Cotton_A_16593_BGI-A2_v1.0 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.6E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.14E-11	5	45	No hit	No description
CDD	cd00202	9.05E-16	6	54	No hit	No description
Pfam	PF00320	6.7E-14	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.2E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	1.7E-10	281	365	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDN 60 RASRVKSISI NKNKEVKFLK RKPNHDTVVV APDYNQGFCK FVDDDTSNRS SSGSAISNSE 120 SCAQFGGADA SDLTGPAQPN VWDSMVPSKK RTCINRLKPS PVEKLTKDLC TILHEQQSSY 180 FSGSSEEDLL LESQIPMVSF EFGHGSVLIR HPSSIAREEE SEASSLSVEN KQYSVNEAYS 240 HCSSFPTCND NKGFKISGHG IEKAKTARQG MEHEQLRRDK IQHEKSVMLE SHNSPLCKID 300 LNDVLNFKEF MKHLTNEEQQ QLLQYLPPLD FSKFPDSLEN MFESPQFKEN LCYFQKLLEE 360 GVFKISVPGV KAEDCKTLKR LVLFNLTKSH WVEHRHVLKK CKSSIGGCAT AREPNATALN 420 NLATMKRSRD SQCQNFPEAR NLNSPKRVIV KATCENKELI DNDGSCFSPG SLLTLPHDGS 480 SPVLDSLHYV DESSDQDLLL DVPSNGSFPL AELLHP

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDN  60
RASRVKSISI NKNKEVKFLK RKPNHDTVVV APDYNQGFCK FVDDDTSNRS SSGSAISNSE  120
SCAQFGGADA SDLTGPAQPN VWDSMVPSKK RTCINRLKPS PVEKLTKDLC TILHEQQSSY  180
FSGSSEEDLL LESQIPMVSF EFGHGSVLIR HPSSIAREEE SEASSLSVEN KQYSVNEAYS  240
HCSSFPTCND NKGFKISGHG IEKAKTARQG MEHEQLRRDK IQHEKSVMLE SHNSPLCKID  300
LNDVLNFKEF MKHLTNEEQQ QLLQYLPPLD FSKFPDSLEN MFESPQFKEN LCYFQKLLEE  360
GVFKISVPGV KAEDCKTLKR LVLFNLTKSH WVEHRHVLKK CKSSIGGCAT AREPNATALN  420
NLATMKRSRD SQCQNFPEAR NLNSPKRVIV KATCENKELI DNDGSCFSPG SLLTLPHDGS  480
SPVLDSLHYV DESSDQDLLL DVPSNGSFPL AELLHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610745.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-145	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A2P5XC73	0.0	A0A2P5XC73_GOSBA; Uncharacterized protein
STRING	Gorai.006G214400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1606	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-132	GATA transcription factor 26