PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16420_BGI-A2_v1.0
Common NameF383_10895
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 425aa    MW: 46319.6 Da    PI: 9.6704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16420_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047180201323
                                 ETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                                 C+ Cg++F+  ++L+ H+ + H
  Cotton_A_16420_BGI-A2_v1.0 180 CSQCGEVFPKIESLELHQAVrH 201
                                 ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933178206IPR007087Zinc finger, C2H2
PROSITE patternPS000280180201IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-24203422No hitNo description
Gene3DG3DSA:3.90.228.104.0E-15205422IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALLTFLPEP AAEPMKVEQP SKRGRRNPLK KQKEKQPSSW DQIKNLLSCK QIEGSKVHDP  60
SKNNQLPHHH GYSKLGSSCK SICSFKDVVH GNTRVVHRAD NSPESSTVGQ ETGLLRRKAA  120
NSSSTRSLSG STRTNNSSTT YTTSSSSRAM QFRKLSGCYE CRMIVDPSRY PSSRTTISAC  180
SQCGEVFPKI ESLELHQAVR HAVSELGPDD SGRNIVEIIF KSSWLKKDNP ICKIERILKV  240
HNTQRTIQRF EDCRDAVKTR ALNSTRKNAR CAADGNELLR FHCTTLSCSL GARGSSSLCG  300
SIPGCGVCTI IKQGFQKKGG GVAAASEFKG VCTTASSGRA HDSLKCTDGR RAMLVCRVIA  360
GRVKRVSEDA PPFEEDNSGG VAAATGLYDS LAAYAGVYSN LEELVVFNPR AILPCFVVIY  420
KAHES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643351.10.0PREDICTED: uncharacterized protein LOC108484170
TrEMBLA0A0B0MGA90.0A0A0B0MGA9_GOSAR; Ribosomal L11 methyltransferase
STRINGGorai.009G195000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein