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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16339_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 476aa MW: 53408.4 Da PI: 6.7524 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 317.8 | 2.2e-97 | 104 | 475 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lL ecA+a+s++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s+++++k+l+ +++++ +++ + f+ Cotton_A_16339_BGI-A2_v1.0 104 RLLKECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCFKTLTLVAEKSHCFDSARKLILKFQ 186 7899**********************************************************9999985554444444445** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 evsP+ +f+h++aN aIlea++ge ++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ ++ + ++e+ +r++kf Cotton_A_16339_BGI-A2_v1.0 187 EVSPWTTFGHVAANGAILEALDGEPKLHIIDISNTLCTQWPTLLEALATRNDDTPHLKLTVVVT-ANIVRSVMKEISQRMEKF 268 ****************************************************************.667999************ PP GRAS 169 Aeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 A+ +gvpfefnv+ ++l +l+ e L v ++Ea+aVn++ +l r++ +e r +v+ +++sl Pkvv+vve+ead +s Cotton_A_16339_BGI-A2_v1.0 269 ARLMGVPFEFNVVsGLNHLGQLTKEVLGVVEDEAVAVNCMGALRRVP-----VEG-RAAVIGMFRSLGPKVVTVVEEEADFTS 345 ************855679****************************9.....444.889*********************955 PP GRAS 251 e..sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpv 327 + +F++ f e+l++y++ f++le+++ ++s+e+ ++Ere +r iv v+ac ++ rer+e+ ++W+erl+ea F++v Cotton_A_16339_BGI-A2_v1.0 346 TryDFVKCFEECLRFYTVYFEMLEESFTPTSNEKLMLERE-CSRGIVRVLACDDDQdsegERERRERGSQWSERLKEA-FSSV 426 5449************************************.89*********87764445689*************98.**** PP GRAS 328 plsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 +s+++++++k+ll+++k g+ + +++ l+l+Wk++p+v+vSaW+ Cotton_A_16339_BGI-A2_v1.0 427 GFSNDVVDDVKALLKRYK-PGWALAqpyQNETGLYLTWKEEPVVWVSAWK 475 ******************.8888885556688999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.526 | 76 | 453 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-95 | 104 | 475 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MKLSSAKISK ESKGASPSHG GHHKNSFHSK RQSHHSILPL QPVDQLEQWS SVAVDMYNNS 60 SSSNNNNNHH HQPQTSHTST SRSSDYSAGG DGEPSAVGNK WASRLLKECA RAISDKDSSK 120 IHHLLWMLNE LASPYGDCDQ KLASYFLQAL FCKATESGQR CFKTLTLVAE KSHCFDSARK 180 LILKFQEVSP WTTFGHVAAN GAILEALDGE PKLHIIDISN TLCTQWPTLL EALATRNDDT 240 PHLKLTVVVT ANIVRSVMKE ISQRMEKFAR LMGVPFEFNV VSGLNHLGQL TKEVLGVVED 300 EAVAVNCMGA LRRVPVEGRA AVIGMFRSLG PKVVTVVEEE ADFTSTRYDF VKCFEECLRF 360 YTVYFEMLEE SFTPTSNEKL MLERECSRGI VRVLACDDDQ DSEGERERRE RGSQWSERLK 420 EAFSSVGFSN DVVDDVKALL KRYKPGWALA QPYQNETGLY LTWKEEPVVW VSAWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-147 | 65 | 476 | 4 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-147 | 65 | 476 | 4 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648440.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-146 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1U8IMU1 | 0.0 | A0A1U8IMU1_GOSHI; protein SHORT-ROOT-like | ||||
STRING | Gorai.011G140100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16273 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-142 | GRAS family protein |