PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16334_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 110aa    MW: 12758.3 Da    PI: 4.3976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16334_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS62.21.1e-192109271374
                        GRAS 271 leaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                                 le+++  +s+e+ ++Ere  +r iv v+ac  ++     rer+e+ ++W+erl+ea F+pv ls+++++++k+ll+++k  g+
  Cotton_A_16334_BGI-A2_v1.0   2 LEESFTLTSNEKLMLERE-CSRGIVRVLACDDDQdnegERERRERGSQWSERLKEA-FSPVGLSDDVVDDVKALLKRYK-PGW 81 
                                 78899999**********.89*********87764445689*************98.**********************.777 PP

                        GRAS 350 rve...eesgslvlgWkdrpLvsvSaWr 374
                                  +    +++  l+l+Wk++p+v+vSaW+
  Cotton_A_16334_BGI-A2_v1.0  82 ALAqpdQNETGLYLTWKEEPVVWVSAWK 109
                                 7764436677888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.6E-172109IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MLEESFTLTS NEKLMLEREC SRGIVRVLAC DDDQDNEGER ERRERGSQWS ERLKEAFSPV  60
GLSDDVVDDV KALLKRYKPG WALAQPDQNE TGLYLTWKEE PVVWVSAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-273110370474Protein SHORT-ROOT
5b3h_B3e-273110316420Protein SHORT-ROOT
5b3h_E3e-273110316420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457395.11e-61PREDICTED: protein SHORT-ROOT-like
TrEMBLA0A0D2RM663e-60A0A0D2RM66_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SUN12e-60A0A2P5SUN1_GOSBA; Uncharacterized protein
STRINGGorai.011G140300.15e-61(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3564222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.12e-21GRAS family protein